View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6978_low_51 (Length: 249)
Name: NF6978_low_51
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_51 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 10350592 - 10350791
Alignment:
| Q |
40 |
aaggaattatagcttatcattattatttccaattttaccgttataatcttaattgcatatattttaatatttatgacattccattagtttacactagatg |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10350592 |
aaggaattatagcttatcattattatttccaattttaccgttataatcttaattgcatatattttaatatttatgacattccattagtttac--tagatg |
10350689 |
T |
|
| Q |
140 |
ttggttgtttcacattcattgtacccacaacttgccaacacacgttctctcactccccttgtgagttgagttgagactgagacagacactatttttcatc |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
10350690 |
ttggttatttcacattcattgtacccacaacttgccaacacacgttctctcactccccttgtgagttgagttgtgactgagacagacactttttttcatc |
10350789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 13838892 - 13838862
Alignment:
| Q |
1 |
tagcttatagcttaaaacttatagcttatca |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13838892 |
tagcttatagcttaaaacttatagcttatca |
13838862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University