View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_52 (Length: 243)
Name: NF6978_low_52
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_52 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 10350270 - 10350502
Alignment:
| Q |
12 |
gacatcacacactttagagataaactcaaattctttacattnnnnnnnnnnggttttaaacttattttttgagaggagctattatttttaatacatgtga |
111 |
Q |
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| T |
10350270 |
gacatcacgcactttagagataaactcaaattctttacattaaaaaaaa--ggttttaaacttatttttttagaggagctattatttttaatacatgtga |
10350367 |
T |
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| Q |
112 |
aaatattagtattgttta----------cttatattttggtaagattcattttttagcttggaccttataaatgtcttataagttataagtttatttgac |
201 |
Q |
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| T |
10350368 |
aaatattagtattgtttacttatgattgcttatattttggtaagattcattttttagcttggaccttataaatgtc-------ttataagttcatttgac |
10350460 |
T |
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| Q |
202 |
taaaaaagacttgtttgataactgtcactttcttacaggctt |
243 |
Q |
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| T |
10350461 |
taaaaaagacttgtttgataagtgtcactttcttacaggctt |
10350502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 29226515 - 29226476
Alignment:
| Q |
195 |
atttgactaaaaaagacttgtttgataactgtcactttct |
234 |
Q |
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| T |
29226515 |
atttgactaaaaaagacatgtttgataaccgtcactttct |
29226476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 10366931 - 10366888
Alignment:
| Q |
193 |
ttatttgactaaaaaagacttgtttgataactgtcactttctta |
236 |
Q |
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| T |
10366931 |
ttatttgcctaaaaaagacttgtttgataaccgtcactttctta |
10366888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 44560124 - 44560181
Alignment:
| Q |
177 |
cttataagttataagtttatttgactaaaaaagacttgtttgataactgtcactttct |
234 |
Q |
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| T |
44560124 |
cttataacttataagttcatatgactaaaaaagacatgtttggtaaccgtcattttct |
44560181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 4767414 - 4767463
Alignment:
| Q |
185 |
ttataagtttatttgactaaaaaagacttgtttgataactgtcactttct |
234 |
Q |
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| T |
4767414 |
ttataagttcatttgagtaaaaaagactcatttgataactgtcattttct |
4767463 |
T |
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