View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_53 (Length: 243)
Name: NF6978_low_53
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18948685 - 18948914
Alignment:
| Q |
1 |
ctaacacgagatacacgcaatagttttggaaaatattaataattgaatgtaaatgtgatagtgtcgtgctggtttcagacactgatgcataccggacatg |
100 |
Q |
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| T |
18948685 |
ctaacacgagatacacgcaatagttttagaaaatattaataattgaacgtaaatgtgataatgtcatgttggtttcagacactgatgcataccggacatg |
18948784 |
T |
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| Q |
101 |
gcatcaatctgaagtgttgatgttgcatagctcacagaaatgtgtcgcagatgttacaaataccttagtttcatcatatgtagcattcaaactactgtct |
200 |
Q |
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| T |
18948785 |
gcatcgatctgaagtgttgatgttgcatagctcacagaaatgtgttgcagatgttacaaataccttagtttcatcatatttagcattcaaactactgtct |
18948884 |
T |
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| Q |
201 |
ttggttctacaaggcttcctcaatttgatg |
230 |
Q |
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| T |
18948885 |
ttggttctacaaggcttcctcaatttgatg |
18948914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 18992504 - 18992299
Alignment:
| Q |
19 |
aatagttttggaaaatattaataattgaatgtaaatgtgatagtgtcgtgctggtttcagacactgatgcataccggacatggcatcaatctgaagtgtt |
118 |
Q |
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| T |
18992504 |
aataattttagaaaataatagtaattgaatgtaaat-----aatgtcgtgttggtttcagacactaatacatgccggacatgccatcgatctgaattgtt |
18992410 |
T |
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| Q |
119 |
gatgttgcatagctcacagaaatgtgtcgcagatgttacaaataccttagtttcatcatatgtagcattcaaactactgtctttggttctacaaggcttc |
218 |
Q |
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| T |
18992409 |
gatattgcatagctcacagaagtgtgtcacagctgttacaaatacctt-ttttgatcgtctttatctttcaaactactgtcttcgtttccataaggcttc |
18992311 |
T |
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| Q |
219 |
ctcaatttgatg |
230 |
Q |
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| T |
18992310 |
ctcaatttgatg |
18992299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 19005250 - 19005055
Alignment:
| Q |
24 |
ttttggaaaatattaataattgaatgtaaatgtgatagtgtcgtgctggtttcagacactgatgcataccggacatggcatcaatctgaagtgttgatgt |
123 |
Q |
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|||| ||||||| || ||||||| |||||||||||| |||||||| || ||||||||| | || ||| ||||||||| |||| ||||||| ||||||| | |
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| T |
19005250 |
ttttagaaaataatagtaattgagtgtaaatgtgatggtgtcgtgttgatttcagacagtcatacatgccggacatgccatcgatctgaattgttgatat |
19005151 |
T |
|
| Q |
124 |
tgcatagctcacagaaatgtgtcgcagatgttacaaataccttagtttcatcatatgtagcattcaaactactgtctttggttctacaaggcttcct |
220 |
Q |
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| T |
19005150 |
tgcatagctcacataagtgtgtcacggctgttacaaatacctt-ttttcatcatctttagctttcaaattactgtcttcctttccacaaggcttcct |
19005055 |
T |
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