View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_54 (Length: 242)

Name: NF6978_low_54
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_54
NF6978_low_54
[»] chr2 (29 HSPs)
chr2 (13-223)||(42698021-42698231)
chr2 (119-202)||(41153174-41153257)
chr2 (109-190)||(35728518-35728599)
chr2 (142-200)||(45034402-45034460)
chr2 (142-200)||(45571034-45571092)
chr2 (142-200)||(45574701-45574759)
chr2 (142-200)||(45578368-45578426)
chr2 (142-200)||(45582035-45582093)
chr2 (142-200)||(45585702-45585760)
chr2 (142-200)||(45589369-45589427)
chr2 (142-200)||(45593036-45593094)
chr2 (142-200)||(45596703-45596761)
chr2 (142-200)||(45600370-45600428)
chr2 (142-200)||(45604037-45604095)
chr2 (142-200)||(45607704-45607762)
chr2 (142-200)||(45611371-45611429)
chr2 (142-200)||(45615038-45615096)
chr2 (141-189)||(32457298-32457346)
chr2 (142-193)||(5559374-5559425)
chr2 (139-202)||(12873725-12873788)
chr2 (139-190)||(28249016-28249067)
chr2 (109-202)||(7943492-7943586)
chr2 (109-199)||(20555263-20555353)
chr2 (128-190)||(33824364-33824426)
chr2 (109-199)||(38554511-38554601)
chr2 (141-190)||(11030277-11030326)
chr2 (142-190)||(3838503-3838551)
chr2 (142-190)||(4063286-4063334)
chr2 (139-199)||(5109368-5109428)
[»] chr8 (15 HSPs)
chr8 (141-200)||(5031468-5031527)
chr8 (142-198)||(12958782-12958838)
chr8 (141-200)||(10184636-10184695)
chr8 (142-200)||(6899424-6899482)
chr8 (133-199)||(42786369-42786435)
chr8 (98-202)||(3236334-3236436)
chr8 (141-190)||(24915254-24915303)
chr8 (141-189)||(16448874-16448922)
chr8 (142-190)||(44796356-44796404)
chr8 (139-202)||(3236413-3236476)
chr8 (142-200)||(24177976-24178034)
chr8 (142-200)||(36366110-36366168)
chr8 (139-209)||(40483278-40483348)
chr8 (111-199)||(4156385-4156474)
chr8 (139-190)||(13831443-13831495)
[»] chr5 (13 HSPs)
chr5 (141-202)||(1138302-1138363)
chr5 (109-190)||(36434731-36434812)
chr5 (109-202)||(21488336-21488429)
chr5 (141-208)||(27488343-27488410)
chr5 (141-205)||(7216943-7217007)
chr5 (142-202)||(29031122-29031182)
chr5 (122-202)||(29299359-29299439)
chr5 (142-202)||(38394430-38394490)
chr5 (139-198)||(6499987-6500046)
chr5 (142-200)||(22731344-22731402)
chr5 (142-190)||(1015241-1015289)
chr5 (110-198)||(14913160-14913248)
chr5 (139-187)||(23262513-23262561)
[»] chr4 (20 HSPs)
chr4 (138-199)||(4386141-4386202)
chr4 (137-202)||(25477626-25477691)
chr4 (119-202)||(48361054-48361137)
chr4 (119-200)||(41116566-41116647)
chr4 (142-201)||(43020759-43020818)
chr4 (142-200)||(20459326-20459384)
chr4 (142-200)||(42804260-42804318)
chr4 (142-200)||(47866040-47866098)
chr4 (137-190)||(42169124-42169177)
chr4 (122-190)||(8347659-8347727)
chr4 (139-203)||(28020560-28020624)
chr4 (141-200)||(40780334-40780391)
chr4 (119-190)||(43117917-43117988)
chr4 (119-202)||(44111808-44111891)
chr4 (139-202)||(53225727-53225790)
chr4 (109-190)||(16412248-16412329)
chr4 (149-202)||(52535953-52536006)
chr4 (139-187)||(2401053-2401101)
chr4 (142-190)||(3043806-3043854)
chr4 (142-190)||(20745417-20745465)
[»] chr1 (20 HSPs)
chr1 (97-190)||(49944847-49944940)
chr1 (142-200)||(43929431-43929489)
chr1 (142-200)||(47678341-47678399)
chr1 (142-200)||(47844538-47844596)
chr1 (141-198)||(519918-519975)
chr1 (141-190)||(37515175-37515224)
chr1 (141-190)||(38738016-38738065)
chr1 (139-199)||(15286014-15286074)
chr1 (119-202)||(34332478-34332561)
chr1 (141-200)||(38040361-38040420)
chr1 (143-189)||(13690247-13690293)
chr1 (128-190)||(27819384-27819446)
chr1 (142-200)||(34662686-34662744)
chr1 (141-202)||(5368855-5368916)
chr1 (141-202)||(10256850-10256910)
chr1 (137-202)||(39748621-39748686)
chr1 (141-190)||(45848953-45849002)
chr1 (139-200)||(50155381-50155442)
chr1 (142-190)||(6793608-6793656)
chr1 (139-191)||(8971241-8971293)
[»] chr3 (9 HSPs)
chr3 (142-200)||(33371865-33371923)
chr3 (142-200)||(5177851-5177909)
chr3 (142-202)||(53441993-53442053)
chr3 (141-200)||(49885383-49885442)
chr3 (109-190)||(33808363-33808443)
chr3 (119-196)||(44518044-44518121)
chr3 (141-190)||(52864965-52865014)
chr3 (141-202)||(54537445-54537506)
chr3 (142-190)||(29457925-29457973)
[»] scaffold0136 (1 HSPs)
scaffold0136 (97-190)||(16543-16636)
[»] scaffold0110 (1 HSPs)
scaffold0110 (140-202)||(1616-1678)
[»] chr7 (16 HSPs)
chr7 (142-200)||(27231919-27231977)
chr7 (141-191)||(43174298-43174348)
chr7 (128-202)||(47942909-47942983)
chr7 (128-202)||(47948339-47948413)
chr7 (109-190)||(4925905-4925986)
chr7 (142-190)||(4826776-4826824)
chr7 (119-202)||(10462379-10462462)
chr7 (119-202)||(28677380-28677463)
chr7 (142-200)||(1366680-1366738)
chr7 (139-189)||(2610202-2610252)
chr7 (137-199)||(44682571-44682633)
chr7 (141-190)||(11668100-11668149)
chr7 (109-190)||(30869239-30869320)
chr7 (139-200)||(31227497-31227558)
chr7 (139-188)||(48838395-48838444)
chr7 (142-202)||(32811463-32811523)
[»] scaffold0767 (1 HSPs)
scaffold0767 (137-205)||(3722-3790)
[»] chr6 (6 HSPs)
chr6 (142-202)||(8646764-8646824)
chr6 (137-190)||(5483875-5483928)
chr6 (138-206)||(12450349-12450417)
chr6 (141-193)||(17265806-17265858)
chr6 (139-202)||(26296206-26296270)
chr6 (119-199)||(30627828-30627908)
[»] scaffold0123 (1 HSPs)
scaffold0123 (119-207)||(28152-28240)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 42698021 - 42698231
Alignment:
Q  13 catcataatgtccacgcacccgctaccaatacgacgttctannnnnnn-aaggaaactatttataagaaatatttagcnnnnnnngattcatagtagaaa 111  Q
    ||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||        |||||| ||| |||    
T  42698021 catcataatttccacgcacccgctaccaatacgacgttctattttttttaaggaaactatttataagaaatatttagcttttttt-attcatggtataaa 42698119  T
Q  112 taatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaatacattga 211  Q
    |||||||||||||||||||| ||||||| |||||||||||| | ||||||| ||| |||| |||||||| ||||||||||||||||||||| ||||||||    
T  42698120 taatatgtttggtctttattctaagcaagatacatcaattactcaatgaatctaaaaagtcaaattttttttataaatatgatcggagggagtacattga 42698219  T
Q  212 tatgttttgcgt 223  Q
    ||||||||||||    
T  42698220 tatgttttgcgt 42698231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 41153174 - 41153257
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| |||| ||| | |||||||||||||| | ||||||| ||| |||| || ||||||||||||||| |||||||||||    
T  41153174 tttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataaataggatcggaggga 41153257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 35728518 - 35728599
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||| |||| |||||||| |||| ||| ||| |||||||||||||| ||||||||||| |||  |||||||| |||||||||    
T  35728518 aaatgatatatttggtctatattctaaacaagatacatcaattattcaatgaatttaaaaagccaaattttttttataaata 35728599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45034460 - 45034402
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45034460 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 45034402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45571092 - 45571034
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45571092 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45571034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45574759 - 45574701
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45574759 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45574701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45578426 - 45578368
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45578426 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45578368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45582093 - 45582035
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45582093 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45582035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45585760 - 45585702
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45585760 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45585702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45589427 - 45589369
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45589427 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45589369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45593094 - 45593036
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45593094 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45593036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45596761 - 45596703
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45596761 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45596703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45600428 - 45600370
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45600428 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45600370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45604095 - 45604037
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45604095 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45604037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45607762 - 45607704
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45607762 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45607704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45611429 - 45611371
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45611429 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45611371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45615096 - 45615038
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  45615096 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 45615038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 32457298 - 32457346
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaat 189  Q
    |||||||||||| ||||||||| ||| |||| |||||||||||||||||    
T  32457298 atacatcaattacttaatgaatctaaaaagtcaaatttttcttataaat 32457346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 5559425 - 5559374
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatga 193  Q
    ||||||||||| | ||||||| ||| |||| |||||||||||||||||||||    
T  5559425 tacatcaattactcaatgaatctaaaaagtcaaatttttcttataaatatga 5559374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 12873788 - 12873725
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| ||||| ||||||||| ||| |||| || ||||||||||||| | |||||||||||    
T  12873788 aaatacattaattacttaatgaatctaaaaagtcaactttttcttataaaaaggatcggaggga 12873725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 28249016 - 28249067
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||| ||||||||||||||| ||| |||| || |||||||||||||||    
T  28249016 aaatacattaattatttaatgaatctaaaaagtcaactttttcttataaata 28249067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 7943492 - 7943586
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaa-atttttcttataaatatgatcggaggga 202  Q
    |||| |||| |||||||| |||| ||  ||| |||||||||||||| ||||||| ||| |||| ||  ||||||||||||||| || ||||||||    
T  7943492 aaatgatatatttggtctatattgtagacaagatacatcaattattcaatgaatctaaaaagtcaatttttttcttataaataggaccggaggga 7943586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 20555353 - 20555263
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    ||||||| | |||||||| |||| ||  ||| |||||||||||||| |||| || ||| || |||| ||||||||||||||| || |||||    
T  20555353 aaataatgtatttggtctatattctagacaagatacatcaattattcaatgtatctaaaaaattaattttttcttataaataggaccggag 20555263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 33824426 - 33824364
Alignment:
Q  128 tattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||  ||| ||| |||||||| | ||||||||||| |||| ||||||||||||||||||    
T  33824426 tattttagacaagatatatcaattactcaatgaatttaaaaagtcaaatttttcttataaata 33824364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 38554511 - 38554601
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    ||||||| | |||||||| |||| ||  | || ||||| ||||| | ||||||||||| ||||||| ||||||||||||||| || |||||    
T  38554511 aaataatgtatttggtctatattctataccaagtacattaattactcaatgaatttaaaaagttaactttttcttataaataggaccggag 38554601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 11030277 - 11030326
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||| | ||||||| ||| ||||||| |||||||||||||||    
T  11030277 atacatcaattactcaatgaatctaaaaagttaattttttcttataaata 11030326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 3838503 - 3838551
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||| ||| ||||||| ||| ||||||| |||||||||||||||    
T  3838503 tacatcaatcattgaatgaatctaaaaagttaactttttcttataaata 3838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 4063334 - 4063286
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||    
T  4063334 tacatcaattattgaatgaatctaaaaaattaactttttcttataaata 4063286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 5109428 - 5109368
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    |||||||| ||||| | ||||||| ||| ||||||| ||||||||||||||| || |||||    
T  5109428 aaatacattaattactcaatgaatctaaaaagttaactttttcttataaataggaccggag 5109368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 5031527 - 5031468
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||    
T  5031527 atacatcaattacttaatgaatttaaaaagttaaatttttcttataaataggaccggagg 5031468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 12958838 - 12958782
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcgga 198  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||||||    
T  12958838 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggatcgga 12958782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 10184636 - 10184695
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||||||||| ||||||| ||| ||||  | |||||||||||||||||||||||||    
T  10184636 atacatcaattattcaatgaatctaaaaagtcgattttttcttataaatatgatcggagg 10184695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 6899482 - 6899424
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||||||| || ||||||    
T  6899482 tacatcaattattgaatgaatctcaaaagttaaatttttcttataaataggaccggagg 6899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 42786435 - 42786369
Alignment:
Q  133 taagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    ||||| || ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || |||||    
T  42786435 taagctaagtacatcaattattgaatgaatctaaaaagttaactttttcttataaataagaccggag 42786369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 3236436 - 3236334
Alignment:
Q  98 attcatagtagaaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcgg 197  Q
    |||||| ||| |||| || | ||||||||  ||||||| | | |||||||||||||| ||||||||||| |||| || ||||||  ||||||| ||||||    
T  3236436 attcattgtataaatgatgtatttggtctaaattttaaactagatacatcaattattcaatgaatttaaaaagtcaattttttc--ataaataagatcgg 3236339  T
Q  198 aggga 202  Q
    |||||    
T  3236338 aggga 3236334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 24915254 - 24915303
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||||||||||||| ||| ||||||| |||||| ||||||||    
T  24915254 atacatcaattatttaatgaatctaaaaagttaattttttcatataaata 24915303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 16448874 - 16448922
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaat 189  Q
    |||||||||||| | ||||||| ||| ||||||||||||||||||||||    
T  16448874 atacatcaattactcaatgaatctaaaaagttaaatttttcttataaat 16448922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 44796404 - 44796356
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  44796404 tacatcaattattgaatgaatctaaaaagttaactttttcttataaata 44796356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 3236413 - 3236476
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||||| ||||  |||||||| || |||| |||| |||||||||||||||| ||||||||    
T  3236413 aaatacatcatttatacaatgaattaaaaaagtcaaatatttcttataaatatgaccggaggga 3236476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 24178034 - 24177976
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||| |||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  24178034 tacatcaaatattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 24177976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 36366110 - 36366168
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||| || ||||||    
T  36366110 tacatcaattattgaatgaatctaaaaaattaactttttcttataaataggaccggagg 36366168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 40483348 - 40483278
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaatacatt 209  Q
    |||||||||| ||||  |||||||| || ||||||||| ||||||||||||| || |||||| | ||||||    
T  40483348 aaatacatcatttatgcaatgaattaaaaaagttaaatatttcttataaataggaccggaggtagtacatt 40483278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 4156474 - 4156385
Alignment:
Q  111 ataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaa-atttttcttataaatatgatcggag 199  Q
    ||||||| |||||||| ||||| || ||| |||||||||||| | |||| || |||||||| ||  ||||||||||||||| ||| ||||    
T  4156474 ataatatatttggtctatatttcaaacaagatacatcaattactcaatgtatctaacaagtcaatttttttcttataaataggattggag 4156385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 13831443 - 13831495
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaa-atttttcttataaata 190  Q
    |||||||||||||||||||||||| ||| |||| ||  |||||||||||||||    
T  13831443 aaatacatcaattatttaatgaatctaaaaagtcaatttttttcttataaata 13831495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 1138302 - 1138363
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||| ||||||||||||||||||| || | || |||||||||||||||||||||||||||    
T  1138302 atacattaattatttaatgaatttaaaaaatcaattttttcttataaatatgatcggaggga 1138363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 36434731 - 36434812
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||| |||| |||||| | |||||||  ||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  36434731 aaatgatatatttggtttatattttagacaagatacatcaattacttaatgaatctaaaaagttaaatttttcttataaata 36434812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 21488336 - 21488429
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||||| | |||||||| |||| ||  |||||||||| |||||  |||||| ||||| || |||| ||||||||||||||| |||||||||||    
T  21488336 aaataatgtatttggtctatattctagacaaaatacattaattacataatgagtttaaaaaattaactttttcttataaataggatcggaggga 21488429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 27488410 - 27488343
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaatacat 208  Q
    |||||||||||||| ||||||| ||| || |||| ||||||||||||||| || |||||| |||||||    
T  27488410 atacatcaattattgaatgaatctaaaaaattaattttttcttataaataggaccggaggtaatacat 27488343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 7217007 - 7216943
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaata 205  Q
    ||||||||||||||||||||||| || || | |||  || |||||||||||||| ||||||||||    
T  7217007 atacatcaattatttaatgaattcaaaaaatgaaaagttgcttataaatatgattggagggaata 7216943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 29031122 - 29031182
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||||| || ||||||| ||| ||||||| ||||||||||||||| || ||||||||    
T  29031122 tacatcaattgttgaatgaatctaaaaagttaactttttcttataaataggaccggaggga 29031182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 29299439 - 29299359
Alignment:
Q  122 ggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||| |||||||  |||||||||||||| | | ||||||| ||| || | |||||||||||||||||| || ||||||||    
T  29299439 ggtctatattttagacaaaatacatcaatcactcaatgaatctaaaaaatcaaatttttcttataaataggaccggaggga 29299359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 38394490 - 38394430
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||| ||||||| ||||||| ||| |||| || ||||||||||||||| |||||||||||    
T  38394490 tacattaattattcaatgaatctaaaaagtcaattttttcttataaataggatcggaggga 38394430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 6500046 - 6499987
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcgga 198  Q
    |||||||||||||||||||| ||| ||| | || || | |||||||||||||||||||||    
T  6500046 aaatacatcaattatttaataaatctaaaatgtcaattgtttcttataaatatgatcgga 6499987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 22731344 - 22731402
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||| ||||||||||||||| ||| || |||| ||||||||||||||| || ||||||    
T  22731344 tacattaattatttaatgaatctaaaaaattaactttttcttataaataggaccggagg 22731402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 1015241 - 1015289
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||| |||||| ||||||| ||| ||||||| |||||||||||||||    
T  1015241 tacatcgattattgaatgaatctaaaaagttaactttttcttataaata 1015289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 14913160 - 14913248
Alignment:
Q  110 aataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcgga 198  Q
    |||||| | |||||||| |||||||    ||||| || ||||| | ||||||||||| || | |||||||||||||||||| |||||||    
T  14913160 aataatgtatttggtctatattttatatcaaatatattaattactcaatgaatttaaaaaatcaaatttttcttataaataggatcgga 14913248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 23262513 - 23262561
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataa 187  Q
    |||||||||| ||||||||||||||||| || || |||||| |||||||    
T  23262513 aaatacatcatttatttaatgaatttaaaaaattgaattttgcttataa 23262561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 4386202 - 4386141
Alignment:
Q  138 aaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||| ||||    
T  4386202 aaaatacatcaattacttaatgaatttaaaaagtcaaatttttcttataaataagattggag 4386141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 25477626 - 25477691
Alignment:
Q  137 caaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||||||||||| | ||||||||||| |||| ||| |||||||||||||||| |||||||||    
T  25477626 caaaatacatcaattactcaatgaatttaaaaagtcaaaattttcttataaatatggtcggaggga 25477691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 48361137 - 48361054
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| |||| ||  |||||||||||||||| | ||||||| ||| |||| |||||||||||||||||| || ||||||||    
T  48361137 tttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaatttttcttataaataggaccggaggga 48361054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 41116647 - 41116566
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||| |||||||   || |||||||||||| | ||||||| ||| ||||||||||||||||||||||| || ||||||    
T  41116647 tttggtctatattttagataagatacatcaattactcaatgaatctaaaaagttaaatttttcttataaataggaccggagg 41116566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 43020818 - 43020759
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggg 201  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || |||||||    
T  43020818 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggaggg 43020759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 20459326 - 20459384
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  20459326 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 20459384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 42804318 - 42804260
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  42804318 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 42804260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 47866098 - 47866040
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  47866098 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 47866040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 42169124 - 42169177
Alignment:
Q  137 caaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||||||||| ||| ||| ||| |||| ||||||||||||||||||    
T  42169124 caaaatacatcaattattcaataaatctaaaaagtcaaatttttcttataaata 42169177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 8347727 - 8347659
Alignment:
Q  122 ggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||| |||||||  |||||||||||||| | | ||||||| ||| |||| ||||||||||||||||||    
T  8347727 ggtctatattttatacaaaatacatcaatcactcaatgaatctaaaaagtcaaatttttcttataaata 8347659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 28020560 - 28020624
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaa 203  Q
    |||||||| ||||| ||||| ||||||| |||| || ||||||||||||| |||| |||||||||    
T  28020560 aaatacattaattacttaataaatttaaaaagtcaactttttcttataaaaatgaccggagggaa 28020624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 40780334 - 40780391
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||||||||| ||| ||||||| |||||||  |||||||||||||| |||||||||    
T  40780334 atacatcaattattgaattaatttaaaaagttaa--ttttcttataaataggatcggagg 40780391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 43117917 - 43117988
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||| |||||||  | |||||||||||||||| ||||||| ||| || | || |||||||||||||||    
T  43117917 tttggtctatattttataccaaatacatcaattattcaatgaatgtaaaaaatcaattttttcttataaata 43117988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 44111808 - 44111891
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| |||| |||  || |||||||||||| | ||||||| ||| |||| || ||||||||||||||| || ||||||||    
T  44111808 tttggtctatattctaaagaagatacatcaattactcaatgaatctaaaaagtcaactttttcttataaataagaccggaggga 44111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 53225727 - 53225790
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| ||||||| ||||||| ||| |||| || ||||||||||||||| || ||||||||    
T  53225727 aaatacattaattattcaatgaatctaaaaagtcaattttttcttataaataggaccggaggga 53225790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 16412329 - 16412248
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||| | |||||||| |||| ||  | ||||| |||||||||| ||||||| ||| |||| || |||||||||||||||    
T  16412329 aaataatgtatttggtctatattctagaccaaatatatcaattattcaatgaatctaaaaagtcaattttttcttataaata 16412248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 52536006 - 52535953
Alignment:
Q  149 attatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||| |||| || ||| ||||||| ||||||||||||||| |||||||||||    
T  52536006 attattcaatgtatctaaaaagttaactttttcttataaataagatcggaggga 52535953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 2401101 - 2401053
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataa 187  Q
    |||||||||| ||||| ||||||||||| ||||||| |||| |||||||    
T  2401101 aaatacatcatttattgaatgaatttaaaaagttaacttttgcttataa 2401053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 3043854 - 3043806
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||    
T  3043854 tacatcaattattgaatgaatctaaaaaattaactttttcttataaata 3043806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 20745417 - 20745465
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||    
T  20745417 tacatcaattattgaatgaatctaaaaaattaactttttcttataaata 20745465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 49944940 - 49944847
Alignment:
Q  97 gattcatagtagaaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||| ||| |||| || | |||||||| |||| ||  ||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  49944940 gattcattgtataaatgatgtatttggtctatattctagacaagatacatcaattattcaatgaatctaaaaagttaaatttttcttataaata 49944847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 43929431 - 43929489
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  43929431 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 43929489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 47678341 - 47678399
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||||||| || ||||||    
T  47678341 tacatcaattattgaatgaatctcaaaagttaaatttttcttataaataggaccggagg 47678399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 47844596 - 47844538
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| | | ||||||||||||||||||||||| || ||||||    
T  47844596 tacatcaattattgaatgaatctcaaaagttaaatttttcttataaataggaccggagg 47844538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 519918 - 519975
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcgga 198  Q
    |||||||||||| | ||||||| ||| |||||||| |||||||||||||| |||||||    
T  519918 atacatcaattactcaatgaatctaaaaagttaaaattttcttataaataggatcgga 519975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 37515175 - 37515224
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||| ||||| ||||||||| ||| |||||||||||||||||||||||    
T  37515175 atacattaattacttaatgaatctaaaaagttaaatttttcttataaata 37515224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 38738016 - 38738065
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||| | ||||||| ||| |||||||||||||||||||||||    
T  38738016 atacatcaattactcaatgaatctaaaaagttaaatttttcttataaata 38738065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 15286074 - 15286014
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    |||||||||| |||| ||||||||| || |||| |||| |||||||||||||| |||||||    
T  15286074 aaatacatcatttatataatgaattaaaaaagtcaaatgtttcttataaatataatcggag 15286014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 34332561 - 34332478
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| |||| ||  |||||||||||||||| | ||||||| ||| |||| ||| |||||||||| ||| ||| |||||||    
T  34332561 tttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaagttttcttatatataagattggaggga 34332478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 38040361 - 38040420
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||||||| | ||||||| ||| |||| |||||||||||||||||| || ||||||    
T  38040361 atacatcaattaatcaatgaatctaaaaagtcaaatttttcttataaataggaccggagg 38040420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 13690293 - 13690247
Alignment:
Q  143 acatcaattatttaatgaatttaacaagttaaatttttcttataaat 189  Q
    |||||| ||||||||||||||||| |||||||| || ||||||||||    
T  13690293 acatcatttatttaatgaatttaaaaagttaaaattgtcttataaat 13690247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 27819384 - 27819446
Alignment:
Q  128 tattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||  ||||||||| ||| |||| ||||||| ||| |||||||||||||||| ||||||    
T  27819384 tattttagacaaaatacaccaaatattcaatgaatctaaaaagttaaatttttcttgtaaata 27819446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 34662744 - 34662686
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||| |||||||||  ||||||||    
T  34662744 tacatcaattattgaatgaatctaaaaagttaacttttttttataaatagaatcggagg 34662686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 5368855 - 5368916
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||| ||||||| |||| || ||| ||||||| |||| ||||||||||||| ||||||||    
T  5368855 atacattaattattcaatgcatctaaaaagttaatttttgcttataaatatgaccggaggga 5368916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 10256850 - 10256910
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| ||||| |||||| |||| ||||||||||||||||||||   ||||||||||||    
T  10256850 atacatcatttattgaatgaacttaa-aagttaaatttttcttataatagtgatcggaggga 10256910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 39748686 - 39748621
Alignment:
Q  137 caaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||||||| ||||  |||||||| || |||| |||| ||||||||||||| |||| ||||||    
T  39748686 caaaatacatcatttatgcaatgaattaaaaaagtcaaatatttcttataaataagatctgaggga 39748621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 45849002 - 45848953
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||||| ||||||| ||| ||||||| | |||||||||||||    
T  45849002 atacatcaattattaaatgaatataaaaagttaattgtttcttataaata 45848953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 50155381 - 50155442
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||||||||| | ||||||| ||| |||| || ||||||||||||||| || ||||||    
T  50155381 aaatacatcaattactcaatgaatctaaaaagtcaactttttcttataaataggaccggagg 50155442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 6793656 - 6793608
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||| ||||||| ||||||||||| || |||| |||||||||||||||    
T  6793656 tacattaattattcaatgaatttaaaaaattaactttttcttataaata 6793608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 8971293 - 8971241
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatat 191  Q
    |||||||| ||||| | ||||||| |||||| |||| ||||||||||||||||    
T  8971293 aaatacattaattactcaatgaatctaacaacttaattttttcttataaatat 8971241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 33371923 - 33371865
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||| ||||||| || |||| |||||||||||||||||||||||||    
T  33371923 tacatcaattattgaataaatttaaaaaattaactttttcttataaatatgatcggagg 33371865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 5177851 - 5177909
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  5177851 tacatcaattattgaatgaatctaaaaagttaattttttcttataaataggaccggagg 5177909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 53441993 - 53442053
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||| ||||||| ||||||||||| |||| || ||||||||||||||| || ||||||||    
T  53441993 tacattaattattcaatgaatttaaaaagtcaactttttcttataaataggaccggaggga 53442053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 49885442 - 49885383
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    |||||||||||||| ||||||| ||| || |||| |||||||||||||||  ||||||||    
T  49885442 atacatcaattattgaatgaatctaaaaaattaattttttcttataaatagaatcggagg 49885383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 33808363 - 33808443
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||  ||||||  |||| ||| | |||||||||||||||| ||| ||||||| ||| | |||||||||||||||||    
T  33808363 aaataatatacttggtcaatattctaatccaaatacatcaattattcaattaatttaaaaag-tcaatttttcttataaata 33808443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 44518121 - 44518044
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcg 196  Q
    |||||||| |||||||  ||| |||||| ||||| | ||||||| ||| |||| ||| |||||||||||||| |||||    
T  44518121 tttggtctatattttagacaagatacattaattactcaatgaatctaaaaagtcaaagttttcttataaataggatcg 44518044  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 52865014 - 52864965
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||| | ||||||| ||| ||||||||||||||| |||||||    
T  52865014 atacatcaattactcaatgaatctaaaaagttaaatttttctcataaata 52864965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 54537506 - 54537445
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||||||| | ||||||| | | |||| |||||||||||||||||| ||||| |||||    
T  54537506 atacatcaattactcaatgaatcttaaaagtcaaatttttcttataaataggatcgaaggga 54537445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 29457925 - 29457973
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||| ||| ||||||| ||| ||||||| |||||||||||||||    
T  29457925 tacatcaatcattgaatgaatctaaaaagttaactttttcttataaata 29457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 16636 - 16543
Alignment:
Q  97 gattcatagtagaaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||| ||| ||||||| | |||||||| |||| ||  ||| || ||||||||| | |||||||| || |||||||||||||||||||||||    
T  16636 gattcattgtataaataatgtatttggtctatattctagtcaagatgcatcaattactcaatgaattaaaaaagttaaatttttcttataaata 16543  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 1616 - 1678
Alignment:
Q  140 aatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||||||||||||| ||||||| ||| || |||| ||||||||||||||| || ||||||||    
T  1616 aatacatcaattattcaatgaatctaaaaaattaattttttcttataaataagaccggaggga 1678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 27231919 - 27231977
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || ||||||    
T  27231919 tacatcaattattgaatgaatctaaaaagttaactttttcttataaataggaccggagg 27231977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 43174348 - 43174298
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatat 191  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||||||||||    
T  43174348 atacatcaattatttaattaatctaaaaagttaaaattttcttataaatat 43174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 47942909 - 47942983
Alignment:
Q  128 tattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||  |||||||||| ||||||||||| ||||||| |||| |||  ||||||||||||| || ||||||||    
T  47942909 tattttagacaaaatacattaattatttaataaatttaaaaagtcaaaaatttcttataaataggaacggaggga 47942983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 47948339 - 47948413
Alignment:
Q  128 tattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||  |||||||||| ||||||||||| ||||||| |||| |||  ||||||||||||| || ||||||||    
T  47948339 tattttagacaaaatacattaattatttaataaatttaaaaagtcaaaaatttcttataaataggaacggaggga 47948413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 4925986 - 4925905
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||| |||| ||| |||| |||||||  |||  ||||||||||| ||||||||| ||| |||| ||||||||||||||||||    
T  4925986 aaatgatatatttagtctatattttagacaagttacatcaattacttaatgaatctaaaaagtcaaatttttcttataaata 4925905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 4826824 - 4826776
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  4826824 tacatcaattattgaatgaatctaaaaagttaactttttcttataaata 4826776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 10462462 - 10462379
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||| | |||||||  ||| |||||||||| | | ||||||| ||| |||| | |||||||||||||||| |||||||||||    
T  10462462 tttggtatatattttagacaagatacatcaatcactcaatgaatctaaaaagtcacatttttcttataaataagatcggaggga 10462379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 28677380 - 28677463
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    |||||||| |||| ||  ||| |||||||||||| | ||| ||| ||| |||| || ||||||||||||||| |||||||||||    
T  28677380 tttggtctatattctagacaagatacatcaattactcaataaatctaaaaagtcaattttttcttataaataggatcggaggga 28677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 1366680 - 1366738
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||| ||||||| || ||||||    
T  1366680 tacatcaattattgaatgaatctaaaaagttaactttttctgataaataagaccggagg 1366738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 2610252 - 2610202
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaat 189  Q
    |||||||||||||| | ||||||||||| || | |||||||||||||||||    
T  2610252 aaatacatcaattactcaatgaatttaaaaaatcaaatttttcttataaat 2610202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 44682633 - 44682571
Alignment:
Q  137 caaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    |||||||||||| ||| ||||||||| | | |||| |||||||||||||||||| || |||||    
T  44682633 caaaatacatcagttacttaatgaatctcaaaagtcaaatttttcttataaataggaccggag 44682571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 11668100 - 11668149
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||| | ||||||| ||| |||| ||||||||||||||||||    
T  11668100 atacatcaattaatcaatgaatgtaaaaagtcaaatttttcttataaata 11668149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 30869239 - 30869320
Alignment:
Q  109 aaataatatgtttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    ||||||| | |||||||| |||| ||  ||| |||||||||||| | ||||||| ||| |||| ||| ||||||||||||||    
T  30869239 aaataatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaagtcaaaattttcttataaata 30869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 31227558 - 31227497
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagg 200  Q
    ||||||||||| |||| ||||||| ||| || |||| ||||||||||||||| || ||||||    
T  31227558 aaatacatcaactattgaatgaatctaaaaaattaactttttcttataaataagaccggagg 31227497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 48838395 - 48838444
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaatttttcttataaa 188  Q
    |||||||||| |||| ||||||||| || ||||||||| |||||||||||    
T  48838395 aaatacatcatttatgtaatgaattaaaaaagttaaatgtttcttataaa 48838444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 32811463 - 32811523
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||||||||| | ||||||| ||| || |||| ||||||||||||||| || ||||||||    
T  32811463 tacatcaattactgaatgaatctaaaaaattaactttttcttataaataggaccggaggga 32811523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 3790 - 3722
Alignment:
Q  137 caaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaata 205  Q
    |||||||||||||||| | ||| ||| ||| |||| |||||||||||||| ||| || |||||||||||    
T  3790 caaaatacatcaattactcaataaatgtaaaaagtcaaatttttcttatatataagaccggagggaata 3722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 8646764 - 8646824
Alignment:
Q  142 tacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggaggga 202  Q
    ||||||||||||| ||| ||| ||| ||| ||| ||||||||||||||| |||||||||||    
T  8646764 tacatcaattattaaataaatctaaaaagataactttttcttataaataggatcggaggga 8646824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 5483928 - 5483875
Alignment:
Q  137 caaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaata 190  Q
    |||||||||||||||||||||| ||||||| |||| |||| ||| || ||||||    
T  5483928 caaaatacatcaattatttaataaatttaaaaagtcaaatatttattgtaaata 5483875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 12450417 - 12450349
Alignment:
Q  138 aaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaatac 206  Q
    ||||||||||||||||| |||||||  || ||||||||  ||||||||||||  || |||| |||||||    
T  12450417 aaaatacatcaattattcaatgaatccaaaaagttaaacatttcttataaattagaccggaaggaatac 12450349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 17265806 - 17265858
Alignment:
Q  141 atacatcaattatttaatgaatttaacaagttaaatttttcttataaatatga 193  Q
    |||||||||||| |  |||||||||| || | |||||||||||||||||||||    
T  17265806 atacatcaattactcgatgaatttaaaaaatcaaatttttcttataaatatga 17265858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 26296270 - 26296206
Alignment:
Q  139 aaatacatcaattatttaatgaatttaacaagttaaattttt-cttataaatatgatcggaggga 202  Q
    |||||||| |||||||||||| |||||| |||||   ||||| ||||||||||||| ||||||||    
T  26296270 aaatacattaattatttaatgtatttaaaaagttgtttttttacttataaatatgaccggaggga 26296206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 30627908 - 30627828
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggag 199  Q
    |||||||| |||||||  ||| |||||||||||| | ||| ||| ||| || | |||||||||||||||||| || |||||    
T  30627908 tttggtctatattttagacaagatacatcaattactcaataaatataaaaaatcaaatttttcttataaataagaccggag 30627828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 28152 - 28240
Alignment:
Q  119 tttggtctttattttaagcaaaatacatcaattatttaatgaatttaacaagttaaatttttcttataaatatgatcggagggaataca 207  Q
    |||| ||| |||||||  ||| ||| |||||||||| ||| ||||| | |||| |||||||||||||| ||| || |||||||| ||||    
T  28152 tttgatctatattttagacaagatatatcaattattcaataaattttaaaagtcaaatttttcttatatataggaccggagggagtaca 28240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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