View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_55 (Length: 236)
Name: NF6978_low_55
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 39006071 - 39006226
Alignment:
| Q |
8 |
gtttggtgttgtagtggtgttagttggttaagtattgtacaagggagatagggaataattattagtacttagaatatcaacattgtttgattaatggcta |
107 |
Q |
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| T |
39006071 |
gtttggtgttgtagtggtgttagttggttaagtattgtacaagggagatagtgaataattattagtacttagaatatcaacattgtttgattaatggcta |
39006170 |
T |
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| Q |
108 |
cacaacaaaatgagaattagttactcatggagaaaaaatacaagttgattgtaaat |
163 |
Q |
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| T |
39006171 |
cacaacaaaatgagaattagttactcatggagaaaaaatacaagttgattgtaaat |
39006226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 39006290 - 39006364
Alignment:
| Q |
159 |
taaatgttggagcaattgagaagtgggtggatggattagaaat---tatgttcaaggaaaaatattgatgtccat |
230 |
Q |
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| T |
39006290 |
taaatattggagcaattgagaagtgggtggatggattagaaattactatgttcaaggaaaaatattgatttccat |
39006364 |
T |
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