View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_59 (Length: 229)

Name: NF6978_low_59
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_59
NF6978_low_59
[»] chr8 (9 HSPs)
chr8 (1-122)||(25746776-25746897)
chr8 (5-140)||(15017922-15018055)
chr8 (1-112)||(22070889-22071002)
chr8 (1-95)||(11342636-11342730)
chr8 (1-89)||(21965424-21965512)
chr8 (43-95)||(12480153-12480205)
chr8 (43-95)||(23079186-23079238)
chr8 (34-121)||(28503963-28504055)
chr8 (43-95)||(19698473-19698526)
[»] chr5 (27 HSPs)
chr5 (1-140)||(37294858-37295000)
chr5 (5-140)||(21501076-21501209)
chr5 (5-140)||(19863923-19864056)
chr5 (7-93)||(20580219-20580306)
chr5 (10-95)||(23887592-23887677)
chr5 (14-95)||(23902235-23902316)
chr5 (10-95)||(7816014-7816099)
chr5 (10-95)||(24947483-24947568)
chr5 (10-95)||(24980348-24980433)
chr5 (7-93)||(30465823-30465909)
chr5 (5-93)||(22898874-22898962)
chr5 (7-123)||(25195444-25195562)
chr5 (7-123)||(25210806-25210924)
chr5 (7-123)||(25274958-25275076)
chr5 (7-93)||(22268953-22269039)
chr5 (7-93)||(27285767-27285853)
chr5 (43-95)||(16682569-16682621)
chr5 (10-93)||(24671979-24672064)
chr5 (10-93)||(24741749-24741834)
chr5 (10-93)||(24754518-24754603)
chr5 (10-93)||(24612353-24612438)
chr5 (10-93)||(24708755-24708840)
chr5 (10-121)||(28898476-28898591)
chr5 (10-121)||(28934871-28934986)
chr5 (43-95)||(570951-571003)
chr5 (43-95)||(15494616-15494668)
chr5 (43-95)||(32449605-32449658)
[»] chr6 (24 HSPs)
chr6 (5-140)||(924145-924278)
chr6 (5-140)||(8765262-8765400)
chr6 (5-122)||(20424405-20424520)
chr6 (7-93)||(17086819-17086905)
chr6 (7-93)||(25179418-25179504)
chr6 (7-121)||(4112774-4112895)
chr6 (10-95)||(21792784-21792869)
chr6 (10-95)||(22254220-22254305)
chr6 (10-99)||(17029222-17029314)
chr6 (10-121)||(12963931-12964046)
chr6 (7-93)||(20156143-20156228)
chr6 (7-93)||(22176604-22176689)
chr6 (20-94)||(16767739-16767816)
chr6 (35-93)||(24376640-24376700)
chr6 (34-121)||(14854492-14854584)
chr6 (10-72)||(28197270-28197331)
chr6 (12-92)||(30720828-30720908)
chr6 (43-95)||(31541446-31541498)
chr6 (34-89)||(20134429-20134486)
chr6 (34-89)||(22198383-22198440)
chr6 (34-82)||(12048309-12048358)
chr6 (43-76)||(22923923-22923956)
chr6 (43-76)||(22939635-22939668)
chr6 (43-76)||(23862080-23862113)
[»] chr4 (31 HSPs)
chr4 (5-140)||(18465271-18465404)
chr4 (1-89)||(15376288-15376376)
chr4 (1-89)||(15396112-15396200)
chr4 (1-95)||(16281031-16281125)
chr4 (1-95)||(20757187-20757281)
chr4 (1-117)||(46660067-46660186)
chr4 (7-139)||(15387102-15387235)
chr4 (1-112)||(15269201-15269315)
chr4 (1-95)||(15299544-15299638)
chr4 (10-89)||(15400032-15400111)
chr4 (5-93)||(1662846-1662934)
chr4 (10-95)||(5200026-5200111)
chr4 (10-95)||(18043877-18043962)
chr4 (10-93)||(1895662-1895745)
chr4 (7-93)||(12785487-12785573)
chr4 (7-93)||(16245097-16245183)
chr4 (5-93)||(17086935-17087023)
chr4 (10-93)||(22727610-22727693)
chr4 (35-93)||(26407042-26407101)
chr4 (35-93)||(1910470-1910529)
chr4 (7-91)||(15219403-15219488)
chr4 (7-91)||(17241580-17241665)
chr4 (4-79)||(26461471-26461545)
chr4 (43-95)||(18027841-18027893)
chr4 (1-65)||(24582027-24582092)
chr4 (1-65)||(24596855-24596920)
chr4 (34-91)||(15238159-15238218)
chr4 (43-95)||(40562908-40562960)
chr4 (11-93)||(17094902-17094986)
chr4 (34-82)||(14240125-14240174)
chr4 (43-95)||(9247903-9247955)
[»] chr3 (25 HSPs)
chr3 (1-140)||(16614978-16615115)
chr3 (1-140)||(22051745-22051882)
chr3 (5-140)||(29942467-29942600)
chr3 (5-140)||(29991621-29991754)
chr3 (5-122)||(10929958-10930073)
chr3 (5-122)||(15476017-15476132)
chr3 (1-95)||(36131488-36131582)
chr3 (5-95)||(15371423-15371513)
chr3 (5-93)||(4653988-4654076)
chr3 (10-95)||(15897548-15897633)
chr3 (7-118)||(1985814-1985927)
chr3 (7-93)||(14141854-14141940)
chr3 (10-93)||(11647117-11647201)
chr3 (7-92)||(23011926-23012011)
chr3 (10-95)||(15882369-15882454)
chr3 (9-99)||(15364181-15364277)
chr3 (12-93)||(19704785-19704866)
chr3 (7-93)||(18525719-18525806)
chr3 (10-72)||(19627943-19628004)
chr3 (34-99)||(28166188-28166255)
chr3 (10-73)||(17787704-17787766)
chr3 (10-73)||(19089225-19089287)
chr3 (43-95)||(18046589-18046642)
chr3 (43-95)||(18062652-18062705)
chr3 (43-95)||(34799771-34799824)
[»] chr1 (19 HSPs)
chr1 (5-140)||(16230524-16230657)
chr1 (1-139)||(20456423-20456564)
chr1 (1-139)||(20541671-20541812)
chr1 (1-89)||(15434096-15434184)
chr1 (1-117)||(15816413-15816532)
chr1 (10-95)||(5137655-5137740)
chr1 (10-95)||(26797995-26798080)
chr1 (10-95)||(4147500-4147585)
chr1 (10-95)||(21887066-21887151)
chr1 (10-93)||(20329889-20329974)
chr1 (10-93)||(20343433-20343518)
chr1 (10-93)||(16405648-16405732)
chr1 (7-93)||(16197755-16197843)
chr1 (7-93)||(16212764-16212852)
chr1 (7-91)||(31447702-31447787)
chr1 (10-121)||(16663314-16663429)
chr1 (1-66)||(37884837-37884903)
chr1 (34-73)||(9193007-9193046)
chr1 (43-95)||(24654746-24654797)
[»] chr2 (18 HSPs)
chr2 (1-122)||(22699921-22700045)
chr2 (1-117)||(27388345-27388464)
chr2 (1-95)||(19446375-19446469)
chr2 (1-95)||(19461184-19461278)
chr2 (1-117)||(27399406-27399525)
chr2 (1-89)||(19559896-19559984)
chr2 (10-116)||(17260054-17260165)
chr2 (7-93)||(21693175-21693261)
chr2 (7-93)||(21707957-21708043)
chr2 (10-117)||(18085607-18085717)
chr2 (43-95)||(13064985-13065037)
chr2 (43-95)||(37870477-37870529)
chr2 (10-72)||(10115637-10115698)
chr2 (43-95)||(20831461-20831513)
chr2 (43-95)||(24045189-24045241)
chr2 (43-95)||(17632411-17632464)
chr2 (43-95)||(27424247-27424299)
chr2 (43-95)||(27439291-27439343)
[»] scaffold0211 (1 HSPs)
scaffold0211 (5-122)||(11148-11263)
[»] scaffold0389 (1 HSPs)
scaffold0389 (10-118)||(15423-15529)
[»] scaffold0109 (2 HSPs)
scaffold0109 (1-117)||(16925-17044)
scaffold0109 (1-117)||(31169-31288)
[»] scaffold0174 (1 HSPs)
scaffold0174 (1-89)||(8276-8364)
[»] chr7 (26 HSPs)
chr7 (1-95)||(15004810-15004904)
chr7 (1-95)||(10851743-10851837)
chr7 (1-95)||(13895363-13895457)
chr7 (5-93)||(16439705-16439793)
chr7 (5-93)||(16454606-16454694)
chr7 (10-95)||(16498698-16498783)
chr7 (10-95)||(16507993-16508078)
chr7 (10-95)||(16523109-16523194)
chr7 (9-99)||(23765027-23765120)
chr7 (10-95)||(48217073-48217158)
chr7 (10-95)||(4055222-4055307)
chr7 (10-93)||(30241785-30241868)
chr7 (7-91)||(7369165-7369250)
chr7 (10-121)||(34194381-34194496)
chr7 (12-121)||(34196224-34196337)
chr7 (43-95)||(35971861-35971913)
chr7 (43-95)||(35993273-35993325)
chr7 (10-72)||(16036716-16036777)
chr7 (10-72)||(16051443-16051504)
chr7 (43-95)||(14930041-14930093)
chr7 (43-95)||(18623053-18623105)
chr7 (7-68)||(15854060-15854120)
chr7 (35-82)||(10839496-10839544)
chr7 (43-95)||(18459755-18459807)
chr7 (43-95)||(15353486-15353539)
chr7 (43-95)||(18626909-18626961)
[»] scaffold0609 (1 HSPs)
scaffold0609 (7-118)||(1593-1706)
[»] scaffold0954 (1 HSPs)
scaffold0954 (5-93)||(2706-2794)
[»] scaffold0089 (2 HSPs)
scaffold0089 (10-95)||(25164-25249)
scaffold0089 (43-95)||(51831-51884)
[»] scaffold0092 (1 HSPs)
scaffold0092 (7-93)||(17340-17426)
[»] scaffold0231 (1 HSPs)
scaffold0231 (10-95)||(26456-26541)
[»] scaffold0184 (1 HSPs)
scaffold0184 (7-93)||(22550-22636)
[»] scaffold0078 (1 HSPs)
scaffold0078 (7-93)||(50208-50294)
[»] scaffold0055 (1 HSPs)
scaffold0055 (11-93)||(7524-7606)
[»] scaffold0052 (1 HSPs)
scaffold0052 (11-93)||(76929-77011)
[»] scaffold0322 (1 HSPs)
scaffold0322 (10-99)||(17398-17490)
[»] scaffold0260 (1 HSPs)
scaffold0260 (10-93)||(5756-5841)
[»] scaffold0021 (2 HSPs)
scaffold0021 (7-93)||(99092-99180)
scaffold0021 (7-93)||(180015-180103)
[»] scaffold0355 (1 HSPs)
scaffold0355 (43-95)||(18178-18230)
[»] scaffold0206 (1 HSPs)
scaffold0206 (35-93)||(12445-12504)
[»] scaffold0393 (1 HSPs)
scaffold0393 (10-121)||(6962-7077)
[»] scaffold0099 (1 HSPs)
scaffold0099 (10-95)||(194-282)
[»] scaffold1704 (1 HSPs)
scaffold1704 (43-95)||(725-777)
[»] scaffold0134 (1 HSPs)
scaffold0134 (9-98)||(23280-23375)
[»] scaffold0031 (1 HSPs)
scaffold0031 (34-82)||(125932-125981)
[»] scaffold1665 (1 HSPs)
scaffold1665 (43-93)||(169-221)
[»] scaffold0143 (1 HSPs)
scaffold0143 (35-82)||(22661-22709)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 25746897 - 25746776
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25746897 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgt 25746798  T
Q  101 ccatttgacatagaaattgaaa 122  Q
    ||||||||||||||||||||||    
T  25746797 ccatttgacatagaaattgaaa 25746776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 15018055 - 15017922
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  15018055 tatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaagtacatgtccat 15017958  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15017957 ttgacatagaaattgaaaaggtaaagtggctaaact 15017922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22070889 - 22071002
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa--attacat 98  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |  |||||||    
T  22070889 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgtaagaaattaaaaggaaattaaactacctagactattacat 22070988  T
Q  99 gtccatttgacata 112  Q
    ||||| || |||||    
T  22070989 gtccacttaacata 22071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11342636 - 11342730
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  11342636 tcattatagagagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaataaattaaaaggaaattaaactacctagaatta 11342730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21965512 - 21965424
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  21965512 tcattatagagagtccattgtcctttacactttgccctagtttacatgatatggtcttgcaagaaattaaaaggaaactaaactaccta 21965424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 12480153 - 12480205
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  12480153 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 12480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 23079238 - 23079186
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  23079238 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 23079186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 28503963 - 28504055
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-tttgacatagaaattgaa 121  Q
    |||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | ||| ||||||||||||||    
T  28503963 gccctagtttacatactatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaacttacatgccaactttaacatagaaattgaa 28504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 19698526 - 19698473
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  19698526 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 19698473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 37294858 - 37295000
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||    
T  37294858 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaactattaca 37294957  T
Q  98 tgtccatttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  37294958 tgtccatttgacatagaaattgaaaaggtaaagtggttaaact 37295000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 21501209 - 21501076
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  21501209 tatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 21501112  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21501111 ttgacatagaaattgaaaaggtaaagtggctaaact 21501076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 19863923 - 19864056
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  ||||| |||||||||||||||||||||| ||| |  |||||||||||||||||||||||||||||||||||||    
T  19863923 tatagagagtccattgtcctttaca--ttgccatagtttacatgctatggtcttgtaaggatataaaaggaaattaaactacctaaaattacatgtccat 19864020  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19864021 ttgacatagaaattgaaaaggtaaagtggctaaact 19864056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 20580219 - 20580306
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-ggaaattaaactacctaaaat 93  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  20580219 tagagagtccattgtcctttacactttgtcctagtttacatgctatggtcttgcaagaaattaaaagggaatttaaactacctaaaat 20580306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 23887677 - 23887592
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  23887677 agagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaatcaaaaggaaactaatctacctaaaatta 23887592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 23902316 - 23902235
Alignment:
Q  14 tccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  23902316 tccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaatcaaaaggaaactaatctacctaaaatta 23902235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 7816099 - 7816014
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  7816099 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 7816014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 24947568 - 24947483
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  24947568 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 24947483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 24980433 - 24980348
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  24980433 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 24980348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 30465823 - 30465909
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  30465823 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 30465909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 22898962 - 22898874
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| ||||||||||| ||| ||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  22898962 tatagagagtccattgtcctttacatttt-ccctaatttacattctatggttttgcaagaaattaaaaggaaatttaaactacctaaaat 22898874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 25195562 - 25195444
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-ggaaattaaactacctaaa--attacatgtcca 103  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||  |||||||| |      
T  25195562 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagggaatttaaactacctaaaatattacatgacat 25195464  T
Q  104 tttgacatagaaattgaaaa 123  Q
    ||| ||||||||||| ||||    
T  25195463 tttaacatagaaattaaaaa 25195444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 25210924 - 25210806
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-ggaaattaaactacctaaa--attacatgtcca 103  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||  |||||||| |      
T  25210924 tagagagtccattgtccattaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagggaatttaaactacctaaaatattacatgacat 25210826  T
Q  104 tttgacatagaaattgaaaa 123  Q
    ||| ||||||||||| ||||    
T  25210825 tttaacatagaaattaaaaa 25210806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 25275076 - 25274958
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-ggaaattaaactacctaaa--attacatgtcca 103  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||  |||||||| |      
T  25275076 tagagagtccattgtccattaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagggaatttaaactacctaaaatattacatgacat 25274978  T
Q  104 tttgacatagaaattgaaaa 123  Q
    ||| ||||||||||| ||||    
T  25274977 tttaacatagaaattaaaaa 25274958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 22268953 - 22269039
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  22268953 tagagagtccattgtccgttaca-ttggccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 22269039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 27285767 - 27285853
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  27285767 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaaataaaaggaaatttaaactacctaaaat 27285853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16682621 - 16682569
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  16682621 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 16682569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 24671979 - 24672064
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  24671979 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 24672064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 24741749 - 24741834
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  24741749 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 24741834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 24754518 - 24754603
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  24754518 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 24754603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 24612353 - 24612438
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-aaaag-gaaatt-aaactacctaaaat 93  Q
    |||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  24612353 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattgaaaagagaaattgaaactacctaaaat 24612438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 24708755 - 24708840
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-aaaag-gaaatt-aaactacctaaaat 93  Q
    |||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  24708755 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattnaaaagagaaattgaaactacctaaaat 24708840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 28898476 - 28898591
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||| ||||| ||  ||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |    
T  28898476 agagtccattgtccgttaca-ttgaccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaact 28898574  T
Q  105 ttgacatagaaattgaa 121  Q
    || ||||||||||||||    
T  28898575 ttaacatagaaattgaa 28898591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 28934871 - 28934986
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||| ||||| ||  ||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |    
T  28934871 agagtccattgtccgttaca-ttgaccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaact 28934969  T
Q  105 ttgacatagaaattgaa 121  Q
    || ||||||||||||||    
T  28934970 ttaacatagaaattgaa 28934986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 570951 - 571003
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  570951 tacatgctatggtcttgcaaggaattaaaagggaactaatctacctaaaatta 571003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 15494668 - 15494616
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||  |||||||||| || ||| |||||||||||||    
T  15494668 tacatgctatggtcttgcaaagaattaaaagggaactaatctacctaaaatta 15494616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 32449605 - 32449658
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  32449605 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 32449658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 924278 - 924145
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  924278 tatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 924181  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  924180 ttgacatagaaattgaaaaggtaaagtggctaaact 924145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 8765400 - 8765262
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attacatgtc 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||    
T  8765400 tatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaattattacatgtc 8765301  T
Q  102 catttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  8765300 catttgacatagaaattgaaaaggtaaagtggcttaact 8765262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 20424520 - 20424405
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    |||| |||||||  ||||||||||| ||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  20424520 tataaagagtccgttgtcctttacattt--ccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 20424423  T
Q  105 ttgacatagaaattgaaa 122  Q
    ||||||||||||||||||    
T  20424422 ttgacatagaaattgaaa 20424405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 17086819 - 17086905
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaatt-aaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  17086819 tagagagtccattgtccgttaca-tttgccctagtttacattctatggtcttacaagaaattaaaaggaaattgaaactacctaaaat 17086905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 25179504 - 25179418
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  25179504 tagagagtccattgtccgttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 25179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 4112774 - 4112895
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-------aaaaggaaattaaactacctaaaattacatg 99  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  4112774 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaaaaaaaggaaattaaactacctaaaattacatg 4112872  T
Q  100 tcca-tttgacatagaaattgaa 121  Q
     | | ||| ||||||||||||||    
T  4112873 ccaactttaacatagaaattgaa 4112895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 21792869 - 21792784
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||| |||| |||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  21792869 agagtccattgtcctttacactttgccctagttcacatactatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 21792784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 22254220 - 22254305
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  22254220 agagtccattgtcctttacactttgccttagtttacatactatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 22254305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 17029222 - 17029314
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa----ggaaattaaactacctaaaattacatg 99  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||| |||||||||    
T  17029222 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaaggggaaattaaactacctagaattacatg 17029314  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 12963931 - 12964046
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |    
T  12963931 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaact 12964029  T
Q  105 ttgacatagaaattgaa 121  Q
    || ||||||||||||||    
T  12964030 ttaacatagaaattgaa 12964046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 20156228 - 20156143
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||| || | ||||||||||||||    
T  20156228 tagagagtccattgtccgttaca-taggccctagtttacattctatggtcttgcaagaatttaaaagaaattaaaactacctaaaat 20156143  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 22176604 - 22176689
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||| || | ||||||||||||||    
T  22176604 tagagagtccattgtccgttaca-taggccctagtttacattctatggtcttgcaagaatttaaaagaaattaaaactacctaaaat 22176689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 16767739 - 16767816
Alignment:
Q  20 gtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt---aaaaggaaa-ttaaactacctaaaatt 94  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||    
T  16767739 gtcctttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaaaggaaatttaaactacctaaaatt 16767816  T

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Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 24376700 - 24376640
Alignment:
Q  35 ccctagtttacatgctatggtctt-gcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  24376700 ccctagtttacattctatggtctttgcaagaaattaaaaggaaatttaaactacctaaaat 24376640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 14854584 - 14854492
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-tttgacatagaaattgaa 121  Q
    |||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | ||| ||||||||||||||    
T  14854584 gccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccgactttaacatagaaattgaa 14854492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 28197270 - 28197331
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa 72  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    
T  28197270 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaa 28197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 30720828 - 30720908
Alignment:
Q  12 agtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaa-aggaaattaaactacctaaaa 92  Q
    |||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||| ||  | |||||||||||||||    
T  30720828 agtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaagagtgatttaaactacctaaaa 30720908  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 31541498 - 31541446
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  31541498 tacatgctatggtcttgcaaggaattaaaagggaactaatctacctaaaatta 31541446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 20134486 - 20134429
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaagg--aaattaaactaccta 89  Q
    |||||||||||||| ||||||||||||||| | ||||||||  |||||||||||||||    
T  20134486 gccctagtttacattctatggtcttgcaaggatttaaaaggcaaaattaaactaccta 20134429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 22198383 - 22198440
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaagg--aaattaaactaccta 89  Q
    |||||||||||||| ||||||||||||||| | ||||||||  |||||||||||||||    
T  22198383 gccctagtttacattctatggtcttgcaaggatttaaaaggcaaaattaaactaccta 22198440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 12048309 - 12048358
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaag-gaaattaaa 82  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  12048309 gccctagtttacattctatggtcttgcaagaatttaaaagagaaattaaa 12048358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 22923923 - 22923956
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaa 76  Q
    ||||||||||||||||||||| ||||||||||||    
T  22923923 tacatgctatggtcttgcaaggaattaaaaggaa 22923956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 22939635 - 22939668
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaa 76  Q
    ||||||||||||||||||||| ||||||||||||    
T  22939635 tacatgctatggtcttgcaaggaattaaaaggaa 22939668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 23862080 - 23862113
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaa 76  Q
    ||||||||||||||||||||| ||||||||||||    
T  23862080 tacatgctatggtcttgcaaggaattaaaaggaa 23862113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 18465271 - 18465404
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  18465271 tatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 18465368  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18465369 ttgacatagaaattgaaaaggtaaagtggctaaact 18465404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15376288 - 15376376
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376288 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 15376376  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15396112 - 15396200
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15396112 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 15396200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 16281125 - 16281031
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16281125 tcattatagagagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaatta 16281031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 20757281 - 20757187
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  20757281 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaactaaaaggaaattaaactacctagaatta 20757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 46660186 - 46660067
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||    
T  46660186 tcattatagagagtcccttgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaactattaca 46660087  T
Q  98 tgtccatttgacatagaaat 117  Q
    |||||| || ||||| ||||    
T  46660086 tgtccacttaacataaaaat 46660067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 15387235 - 15387102
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attacatgtcca 103  Q
    ||||||||||| ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  15387235 tagagagtccattgtccgttaca-ttggctctagtttacattctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattattacatgtcca 15387137  T
Q  104 tttgacatagaaattgaaaagggaaagtggctaaac 139  Q
    |||||||||||||||| ||||  |||||||||||||    
T  15387136 tttgacatagaaattg-aaagataaagtggctaaac 15387102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15269201 - 15269315
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacc-taaa--attaca 97  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||  ||||||    
T  15269201 tcattatagagagtacattgtcctttacactttgccctaatttacatgctattgtcttgcaagaaattaaaaggaaattaaactaccatgaattattaca 15269300  T
Q  98 tgtccatttgacata 112  Q
    |||||| ||||||||    
T  15269301 tgtccacttgacata 15269315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15299544 - 15299638
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  15299544 tcattatagagagtccattgtcctttacactttgctctaatttacatcctatggtcttgcaaaaaattaaaaggaaattaaactacctagaatta 15299638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 15400032 - 15400111
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  15400032 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgctagtaattaaaaggaaattaaactaccta 15400111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 1662934 - 1662846
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1662934 tatagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaacttaaactacctaaaat 1662846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 5200026 - 5200111
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  5200026 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 5200111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 18043962 - 18043877
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  18043962 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 18043877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 1895745 - 1895662
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1895745 agagtccattgtcctttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 1895662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 12785573 - 12785487
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  12785573 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaacttaaactacctaaaat 12785487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 16245097 - 16245183
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16245097 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaacttaaactacctaaaat 16245183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 17087023 - 17086935
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaagga-aattaaactacctaaaat 93  Q
    |||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||    
T  17087023 tataaagagtccattgtcctttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggagatttaaactacctaaaat 17086935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 22727610 - 22727693
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaat 93  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||    
T  22727610 agagtccatcgtcctttacactttgctctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaat 22727693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 26407042 - 26407101
Alignment:
Q  35 ccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  26407042 ccctagtttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 26407101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 1910529 - 1910470
Alignment:
Q  35 ccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1910529 ccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 1910470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 15219488 - 15219403
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaag--gaaattaaactacctaaa 91  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||  ||| | ||||||||||||    
T  15219488 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagaagaattaaaactacctaaa 15219403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 17241665 - 17241580
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaa--aggaaattaaactacctaaa 91  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||  ||||| | ||||||||||||    
T  17241665 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagaggaattaaaactacctaaa 17241580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 26461471 - 26461545
Alignment:
Q  4 ttatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaatt 79  Q
    |||||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||    
T  26461471 ttatagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaatttaaaagggaatt 26461545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 18027841 - 18027893
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  18027841 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 18027893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24582027 - 24582092
Alignment:
Q  1 tcattatagagagtccagtgtccttt-acactttgccctagtttacatgctatggtcttgcaagaa 65  Q
    |||||| ||| |||||| |||||||| |||||||| |||||||||||||||| |||||||||||||    
T  24582027 tcattagagatagtccattgtccttttacactttgtcctagtttacatgctaaggtcttgcaagaa 24582092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24596855 - 24596920
Alignment:
Q  1 tcattatagagagtccagtgtccttt-acactttgccctagtttacatgctatggtcttgcaagaa 65  Q
    |||||| ||| |||||| |||||||| |||||||| |||||||||||||||| |||||||||||||    
T  24596855 tcattagagatagtccattgtccttttacactttgtcctagtttacatgctaaggtcttgcaagaa 24596920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 15238218 - 15238159
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaag--gaaattaaactacctaaa 91  Q
    |||||||||||||| |||||||||||||||||||||||||  ||| | ||||||||||||    
T  15238218 gccctagtttacattctatggtcttgcaagaaattaaaagaagaattaaaactacctaaa 15238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 40562960 - 40562908
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  40562960 tacatgctatggtcttgcaaggaattaaaagggaactaatctacctaaaatta 40562908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 17094986 - 17094902
Alignment:
Q  11 gagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    ||||||| ||||| ||||| || | |||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  17094986 gagtccattgtccgttaca-ttggtcctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 17094902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14240125 - 14240174
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaag-gaaattaaa 82  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  14240125 gccctagtttacattctatggtcttgcaagaatttaaaagagaaattaaa 14240174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 9247903 - 9247955
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||||||| | || ||| ||| |||||||||    
T  9247903 tacatgctatggtcttgcaaggaattaaaaaggaactaatctatctaaaatta 9247955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 16614978 - 16615115
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgt 100  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  16614978 tcattatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaagaattaaaaggaaattaaactacctaaaattacatgt 16615075  T
Q  101 ccatttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  16615076 ccatttgacatagaaattgaaaaggtaaagtggctaaact 16615115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 22051882 - 22051745
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgt 100  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  22051882 tcattatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaagaattaaaaggaaattaaactacctaaaattacatgt 22051785  T
Q  101 ccatttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  22051784 ccatttgacatagaaattgaaaaggtaaagtggctaaact 22051745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 29942600 - 29942467
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  29942600 tatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 29942503  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29942502 ttgacatagaaattgaaaaggtaaagtggctaaact 29942467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 29991754 - 29991621
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  29991754 tatagagagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 29991657  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29991656 ttgacatagaaattgaaaaggtaaagtggctaaact 29991621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 10929958 - 10930073
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    |||||||||| || ||||||||||| ||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  10929958 tatagagagttcattgtcctttacattt--ccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 10930055  T
Q  105 ttgacatagaaattgaaa 122  Q
    ||||||||||||||||||    
T  10930056 ttgacatagaaattgaaa 10930073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 15476017 - 15476132
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    |||| |||||||| ||||||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  15476017 tataaagagtccattgtcctttacattt--ccctattttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 15476114  T
Q  105 ttgacatagaaattgaaa 122  Q
    ||||||||||||||||||    
T  15476115 ttgacatagaaattgaaa 15476132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36131488 - 36131582
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  36131488 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaactaaaaggaaattaaactacctagaatta 36131582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 15371513 - 15371423
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  15371513 tatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaactaaaaggaaattaaactacctagaatta 15371423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 4654076 - 4653988
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4654076 tatagagagtccattgtccgttacg-tttgccctagtttacattctatggtcttgcaagaaattaaaaggaaacttaaactacctaaaat 4653988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 15897548 - 15897633
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  15897548 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 15897633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 1985814 - 1985927
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaa--attacatgtcca 103  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||  |||||||| |      
T  1985814 tagagagtccattgtccgttaca-tttgccctagtttacattctatggtcttgcaagaaatcaaaaagaaatttaaactacctaaaatattacatgacat 1985912  T
Q  104 tttgacatagaaatt 118  Q
    |||||||||||||||    
T  1985913 tttgacatagaaatt 1985927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 14141854 - 14141940
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14141854 tagagagtccattgtccgttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 14141940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 11647117 - 11647201
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaagg--aaattaaactacctaaaat 93  Q
    |||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  11647117 agagtccattgtcctttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagggaaaattaaactacctaaaat 11647201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 23011926 - 23012011
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaa 92  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23011926 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaa 23012011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 15882369 - 15882454
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  15882369 agagtccattgtcctttacactttgccatagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 15882454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 15364181 - 15364277
Alignment:
Q  9 gagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-------ggaaattaaactacctaaaattacatg 99  Q
    ||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  15364181 gagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaaaaaagggaaattaaactacctaaaattacatg 15364277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 19704866 - 19704785
Alignment:
Q  12 agtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-ggaaattaaactacctaaaat 93  Q
    |||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  19704866 agtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagggaatttaaactacctaaaat 19704785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 18525806 - 18525719
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttg-caagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  18525806 tagagagtccattgtccgttaca-tttgccctaatttacattctatggtcttgacaaaaaattaaaaggaaatttaaactacctaaaat 18525719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 19627943 - 19628004
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa 72  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    
T  19627943 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaa 19628004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 28166188 - 28166255
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaaggaaa--ttaaactacctaaaattacatg 99  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||  | |||||||||||| |||||||    
T  28166188 gccctagtttacattctatggtcttgcaagaatttaaaagaaaaattgaaactacctaaatttacatg 28166255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 17787766 - 17787704
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaag 73  Q
    |||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||    
T  17787766 agagtccattgtccgttaca-ttggccctggtttacattctatggtcttgcaagaaattaaaag 17787704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 19089287 - 19089225
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaag 73  Q
    |||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||    
T  19089287 agagtccattgtccgttaca-ttggcccttgtttacattctatggtcttgcaagaaattaaaag 19089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 18046642 - 18046589
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  18046642 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 18046589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 18062705 - 18062652
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  18062705 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 18062652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 34799771 - 34799824
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  34799771 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 34799824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 16230657 - 16230524
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  16230657 tatagagagtccattgtcctttaca--ttgtcctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 16230560  T
Q  105 ttgacatagaaattgaaaagggaaagtggctaaact 140  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16230559 ttgacatagaaattgaaaaggtaaagtggctaaact 16230524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 20456564 - 20456423
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||   ||||||    
T  20456564 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggccttgcaagaaacttaaaggaaattaagctacctaaaattattaca 20456465  T
Q  98 tgtccatttgacatagaaattgaaaagggaaagtggctaaac 139  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  20456464 tgtccatttgacatagaaattgaaaaggtaaagtggctaaac 20456423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 20541812 - 20541671
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||   ||||||    
T  20541812 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggccttgcaagaaacttaaaggaaattaagctacctaaaattattaca 20541713  T
Q  98 tgtccatttgacatagaaattgaaaagggaaagtggctaaac 139  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  20541712 tgtccatttgacatagaaattgaaaaggtaaagtggctaaac 20541671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15434184 - 15434096
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434184 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 15434096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 15816413 - 15816532
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |   ||||||    
T  15816413 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaagctaaaaggaaattaaactacctagaattattaca 15816512  T
Q  98 tgtccatttgacatagaaat 117  Q
    ||||||||| ||||| ||||    
T  15816513 tgtccatttaacataaaaat 15816532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 5137740 - 5137655
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  5137740 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 5137655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 26798080 - 26797995
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  26798080 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 26797995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 4147500 - 4147585
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||  ||| |||||||||||||    
T  4147500 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaggaaagctaatctacctaaaatta 4147585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 21887066 - 21887151
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || || |||||| ||  ||| |||||||| ||||    
T  21887066 agagtccactgtcctttacactttgccctagtttacatgctatggtcttgcgagtaactaaaagaaagctaatctacctaagatta 21887151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 20329889 - 20329974
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-aaaaggaaa--ttaaactacctaaaat 93  Q
    |||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||    
T  20329889 agagtccattgtcctttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaggaaattttaaactacctaaaat 20329974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 20343433 - 20343518
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-aaaaggaaa--ttaaactacctaaaat 93  Q
    |||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||    
T  20343433 agagtccattgtcctttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaggaaattttaaactacctaaaat 20343518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 16405732 - 16405648
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-aaaaggaaa-ttaaactacctaaaat 93  Q
    |||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  16405732 agagtccattgtcctttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaggaaatttaaactccctaaaat 16405648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 16197755 - 16197843
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  16197755 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 16197843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 16212764 - 16212852
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  16212764 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 16212852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 31447702 - 31447787
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaa--aggaaattaaactacctaaa 91  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||| |||||||||||||||||  ||||| | ||||||||||||    
T  31447702 tagagagtccattgtccgttaca-ttggccctagtttacattctatgatcttgcaagaaattaaaagaggaattaaaactacctaaa 31447787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 16663314 - 16663429
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||| ||||| ||  ||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |    
T  16663314 agagtccattgtccgttaca-ttgaccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaact 16663412  T
Q  105 ttgacatagaaattgaa 121  Q
    || ||||||||||||||    
T  16663413 ttaacatagaaattgaa 16663429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37884837 - 37884903
Alignment:
Q  1 tcattatagagagtccagtgtccttt-acactttgccctagtttacatgctatggtcttgcaagaaa 66  Q
    |||||| ||| |||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  37884837 tcattagagatagtccattgtccttttacactttgtcctagtttacatgctaaggtcttgcaagaaa 37884903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 9193007 - 9193046
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaag 73  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  9193007 gccctagtttacattctatggtcttgcaagaaattaaaag 9193046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 24654797 - 24654746
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| || ||||||||||    
T  24654797 tacatgctatggtcttgcaaggaattaaaaggaaactaatct-cctaaaatta 24654746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22700045 - 22699921
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |   ||||||    
T  22700045 tcattgtagagagttcattgtcctttacactttgccctagtttacatgttatggtcttgcaagaaattaaaaggaaattaaactacctagaactattaca 22699946  T
Q  98 tgtccatttgacatagaaattgaaa 122  Q
    |||||||||||||||||||||||||    
T  22699945 tgtccatttgacatagaaattgaaa 22699921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27388464 - 27388345
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |   ||||||    
T  27388464 tcattatagagagtccattgtcctttacactttgccctagtttacatactatggtcttgcaagaaattaaaaggaaattaaactacctagaactattaca 27388365  T
Q  98 tgtccatttgacatagaaat 117  Q
    |||||| || ||||||||||    
T  27388364 tgtccacttaacatagaaat 27388345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19446375 - 19446469
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19446375 tcattatagagagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaatta 19446469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19461184 - 19461278
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19461184 tcattatagagagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaatta 19461278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27399525 - 27399406
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |   ||||||    
T  27399525 tcattatagagagtccattgtcctttacactttgccctagtttacatactatggtcttgcaagaaattaaaatgaaattaaactacctagaactattaca 27399426  T
Q  98 tgtccatttgacatagaaat 117  Q
    |||||| || ||||||||||    
T  27399425 tgtccacttaacatagaaat 27399406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19559896 - 19559984
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19559896 tcattatagagagtccattgtcctttacactttgccctagtttacatgatatggtcttgcaagaaattaaaaggaaattaaactaccta 19559984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 17260165 - 17260054
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||| |||||||||||| ||||||||| | |    
T  17260165 agagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgtcaatt 17260066  T
Q  105 ttgacatagaaa 116  Q
    ||||||||||||    
T  17260065 ttgacatagaaa 17260054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 21693175 - 21693261
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21693175 tagagagtccattgtcctttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 21693261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 21707957 - 21708043
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21707957 tagagagtccattgtcctttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 21708043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 18085717 - 18085607
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaag--gaaatt-aaactacctaaaattacatgtcca-tt 105  Q
    |||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||  |||||| |||||||||||| ||||||||| | ||    
T  18085717 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggagaaattgaaactacctaaatttacatgtcaactt 18085619  T
Q  106 tgacatagaaat 117  Q
    | ||||||||||    
T  18085618 taacatagaaat 18085607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 13065037 - 13064985
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  13065037 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 13064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 37870477 - 37870529
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  37870477 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 37870529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 10115637 - 10115698
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa 72  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    
T  10115637 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaa 10115698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 20831513 - 20831461
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||| | ||| |||||||||||||    
T  20831513 tacatgctatggtcttgcaaggaattaaaaggagactaatctacctaaaatta 20831461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 24045241 - 24045189
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  24045241 tacatgctatggtcttgcaaggaattaaaagggaactaatctacctaaaatta 24045189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17632464 - 17632411
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  17632464 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 17632411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 27424247 - 27424299
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||| |||| ||||||||| ||||||||||| | ||| |||||||||||||    
T  27424247 tacatggtatgttcttgcaaggaattaaaaggagactaatctacctaaaatta 27424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 27439291 - 27439343
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||| |||| ||||||||| ||||||||||| | ||| |||||||||||||    
T  27439291 tacatggtatgttcttgcaaggaattaaaaggagactaatctacctaaaatta 27439343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 11148 - 11263
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccat 104  Q
    |||| |||||||| ||||||||||| ||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  11148 tataaagagtccattgtcctttacattt--ccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccat 11245  T
Q  105 ttgacatagaaattgaaa 122  Q
    ||||||||||||||||||    
T  11246 ttgacatagaaattgaaa 11263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 15423 - 15529
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaattacatgtccatttgac 109  Q
    |||||||| |||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15423 agagtccattgtcctttaca--ttgccctagtttacatgctatggtcttgtaaggaattaaaaggaaattaaactacctaaaattacatgtccatttgac 15520  T
Q  110 atagaaatt 118  Q
    |||||||||    
T  15521 atagaaatt 15529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17044 - 16925
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |   ||||||    
T  17044 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaagggaattaaactacctagaactattaca 16945  T
Q  98 tgtccatttgacatagaaat 117  Q
    |||||| || ||||||||||    
T  16944 tgtccacttaacatagaaat 16925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31288 - 31169
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaa---attaca 97  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |   ||||||    
T  31288 tcattatagagagtccattgtcctttacactttgccttagtttacatgttatggtcttgcaagaaattaaaagggaattaaactacctagaactattaca 31189  T
Q  98 tgtccatttgacatagaaat 117  Q
    |||||| || ||||||||||    
T  31188 tgtccacttaacatagaaat 31169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8364 - 8276
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 89  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8364 tcattatagagagtccattgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactaccta 8276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15004810 - 15004904
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15004810 tcattatagagagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaatta 15004904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 10851837 - 10851743
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10851837 tcattatagagagtccattgtcctttacactttgcccaaatttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctagaatta 10851743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 13895363 - 13895457
Alignment:
Q  1 tcattatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13895363 tcattatagagagtccattgtcctttacactttgccctaatttacatgctatggtcttgcaagaaattaaaaggtaattaaactacctagaatta 13895457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 16439705 - 16439793
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||  ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16439705 tatagagagtccgttgtcctttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 16439793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 16454606 - 16454694
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||  ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16454606 tatagagagtccgttgtcctttaca-tttgccctaatttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 16454694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 16498698 - 16498783
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  16498698 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 16498783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 16507993 - 16508078
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  16507993 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 16508078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 16523109 - 16523194
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  16523109 agagtccattgtcctttacactttgccctagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 16523194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 23765120 - 23765027
Alignment:
Q  9 gagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa----ggaaattaaactacctaaaattacatg 99  Q
    ||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  23765120 gagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaaagggaaattaaactacctaaaattacatg 23765027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 48217158 - 48217073
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  48217158 agagtccattgtcctttacactttgccctagtttacatactatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 48217073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 4055307 - 4055222
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  4055307 agagtccatagtcctttacactttgcactagtttacatgctatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 4055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 30241785 - 30241868
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    |||||||| ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  30241785 agagtccattgtccgttaca-tttgccctaatttacattctatgatcttgcaagaaattaaaaggaaatttaaactacctaaaat 30241868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 7369250 - 7369165
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaa--aggaaattaaactacctaaa 91  Q
    ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||||||  ||||| | ||||||||||||    
T  7369250 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaagaggaattaaaactacctaaa 7369165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 34194496 - 34194381
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |    
T  34194496 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaact 34194398  T
Q  105 ttgacatagaaattgaa 121  Q
    || ||||||||||||||    
T  34194397 ttaacatagaaattgaa 34194381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 34196224 - 34196337
Alignment:
Q  12 agtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-ttt 106  Q
    |||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |||    
T  34196224 agtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaacttt 34196322  T
Q  107 gacatagaaattgaa 121  Q
     ||||||||||||||    
T  34196323 aacatagaaattgaa 34196337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 35971913 - 35971861
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  35971913 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 35971861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 35993325 - 35993273
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  35993325 tacatgctatggtcttgcaaggaattaaaaggaaactaatctacctaaaatta 35993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 16036777 - 16036716
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa 72  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    
T  16036777 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaa 16036716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 16051504 - 16051443
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa 72  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    
T  16051504 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaa 16051443  T

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Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 14930041 - 14930093
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||  ||||||||||||| ||| |||||||||||||    
T  14930041 tacatgctatggtcttgcaaagaattaaaaggaaactaatctacctaaaatta 14930093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 18623105 - 18623053
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||||| |||||| ||| |||||||||||||    
T  18623105 tacatgctatggtcttgcaaggaattaagaggaaactaatctacctaaaatta 18623053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 15854120 - 15854060
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt 68  Q
    |||||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||||||    
T  15854120 tagagagttcattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaatt 15854060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 10839496 - 10839544
Alignment:
Q  35 ccctagtttacatgctatggtcttgcaagaaattaaaag-gaaattaaa 82  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  10839496 ccctagtttacattctatggtcttgcaagaatttaaaagagaaattaaa 10839544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 18459755 - 18459807
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||||||||||||| || ||||||||| || |||| |||||||||||||    
T  18459755 tacatgctatggtcttgcgagtaattaaaagaaagttaatctacctaaaatta 18459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 15353486 - 15353539
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  15353486 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 15353539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 18626961 - 18626909
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||| ||||||||||| ||||||||||| | |||  ||||||||||||    
T  18626961 tacatgctacggtcttgcaaggaattaaaaggagactaatttacctaaaatta 18626909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 1593 - 1706
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaattaaactacctaaaattacatgtcca 103  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||| |      
T  1593 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaagggaaattaaactacctaaaattacatgccat 1691  T
Q  104 tttgacatagaaatt 118  Q
    ||| |||||||||||    
T  1692 tttaacatagaaatt 1706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 2794 - 2706
Alignment:
Q  5 tatagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  2794 tatagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaacttaaactacctaaaat 2706  T

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Target: scaffold0089 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 25249 - 25164
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||  ||| |||||||||||||    
T  25249 agagtccattgtcctttacactttgccctagtttacatgctatggttttgcaagtaattaaaagaaagctaatctacctaaaatta 25164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 51831 - 51884
Alignment:
Q  43 tacatgctatggtcttgcaagaaatt-aaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  51831 tacatgctatggtcttgcaaggaattaaaaagggaactaatctacctaaaatta 51884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 17426 - 17340
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  17426 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 17340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 26456 - 26541
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||| ||  ||| |||||||||||||    
T  26456 agagtccattgtcctttacactttgccctagtttacatactatggtcttgcgagtaattaaaagaaagctaatctacctaaaatta 26541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 22636 - 22550
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  22636 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaagttaaaaggaaatttaaactacctaaaat 22550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 50208 - 50294
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  50208 tagagagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaagttaaaaggaaatttaaactacctaaaat 50294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 7524 - 7606
Alignment:
Q  11 gagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  7524 gagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 7606  T

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Target: scaffold0052 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 77011 - 76929
Alignment:
Q  11 gagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  77011 gagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaggaaatttaaactacctaaaat 76929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 17490 - 17398
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa----ggaaattaaactacctaaaattacatg 99  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||| |||||||||    
T  17490 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaaggggaaattaaactacctagaattacatg 17398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 5756 - 5841
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaatt-aaaaggaaa--ttaaactacctaaaat 93  Q
    |||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||    
T  5756 agagtccattgtcctttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaggaaattttaaactacctaaaat 5841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 99180 - 99092
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  99180 tagagagtccattgtccgttaca-tttgccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 99092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 180103 - 180015
Alignment:
Q  7 tagagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa--ggaaatt-aaactacctaaaat 93  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  180103 tagagagtccattgtccgttaca-tttgccctagtttacattctatggtcttgcaagaaattaaaaagagaaattgaaactacctaaaat 180015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 18230 - 18178
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  18230 tacatgctatggtcttgcaagaaattaaaaggaaactaatctacctaaaatta 18178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 12504 - 12445
Alignment:
Q  35 ccctagtttacatgctatggtcttgcaagaaattaaaaggaaa-ttaaactacctaaaat 93  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  12504 ccctagtttacattctatggtcttgcaagaaaataaaaggaaatttaaactacctaaaat 12445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 7077 - 6962
Alignment:
Q  10 agagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa---ggaaatt-aaactacctaaaattacatgtcca-t 104  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||| | | |    
T  7077 agagtccattgtccgttaca-ttggccctagtttacattctatggtcttgcaagaaattaaaaaagagaaattgaaactacctaaatttacatgccaact 6979  T
Q  105 ttgacatagaaattgaa 121  Q
    || ||||||||||||||    
T  6978 ttaacatagaaattgaa 6962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 194 - 282
Alignment:
Q  10 agagtccagtgtcctttacactttg-ccctagtttac-atgctatggtcttgcaag-aaattaaaaggaaattaaactacctaaaatta 95  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| || |||||||||| ||  ||| |||||||||||||    
T  194 agagtccattgtcctttacactttgaccctagtttacaatgctatggtcttgcgagtaaattaaaagaaagctaatctacctaaaatta 282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1704 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1704
Description:

Target: scaffold1704; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 725 - 777
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaaggaaattaaactacctaaaatta 95  Q
    ||||||||||||||||||||| ||||||||||| | ||| |||||||||||||    
T  725 tacatgctatggtcttgcaaggaattaaaaggagactaatctacctaaaatta 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 23375 - 23280
Alignment:
Q  9 gagagtccagtgtcctttacactttgccctagtttacatgctatggtcttgcaagaaattaaaa-------ggaaattaaactacctaaaattacat 98  Q
    ||||||||| ||||| ||||  || |||||||||||||| |||||||||||| | |||||||||       ||||||||||||||||||||||||||    
T  23375 gagagtccattgtccgttacg-ttggccctagtttacattctatggtcttgcgataaattaaaaaaaaaaaggaaattaaactacctaaaattacat 23280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 125981 - 125932
Alignment:
Q  34 gccctagtttacatgctatggtcttgcaagaaattaaaag-gaaattaaa 82  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  125981 gccctagtttacattctatggtcttgcaagaatttaaaagagaaattaaa 125932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1665 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1665
Description:

Target: scaffold1665; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 169 - 221
Alignment:
Q  43 tacatgctatggtcttgcaagaaattaaaa-ggaaatt-aaactacctaaaat 93  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  169 tacatgctatggtcttgcaaaaaattaaaagggaaattgaaactacctaaaat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 22709 - 22661
Alignment:
Q  35 ccctagtttacatgctatggtcttgcaagaaattaaaag-gaaattaaa 82  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  22709 ccctagtttacattctatggtcttgcaagaatttaaaagagaaattaaa 22661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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