View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_61 (Length: 228)
Name: NF6978_low_61
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5404183 - 5404322
Alignment:
| Q |
1 |
tcaactaaacccagagcaattaatataaattaacaaaatattctaatagaaaccacatgatactagtagaaggatacgttgcagccttcagcattggttc |
100 |
Q |
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| T |
5404183 |
tcaactaaacccagagcaattaatataaattaacaaaatattctaatagaaaccacatgatactaatagaaggatacgttgcagccttcagcattggttc |
5404282 |
T |
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| Q |
101 |
aaccatctgcatgggaaaacagaacattggttgaaataag |
140 |
Q |
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| T |
5404283 |
aaccatctgcatgggaaaacagaacattggttgaaataag |
5404322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 5404346 - 5404408
Alignment:
| Q |
162 |
taagcaatctattgttaaatctatgattatgtaaccaagtgattgggctcaagtggttaatga |
224 |
Q |
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| T |
5404346 |
taagcaatcaattgttaaatctatgattatgtaaccaagtgattgggctcaagtggttaatga |
5404408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 35696472 - 35696502
Alignment:
| Q |
194 |
aaccaagtgattgggctcaagtggttaatga |
224 |
Q |
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| T |
35696472 |
aaccaagtgattgggctcaagtggttaatga |
35696502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 35067823 - 35067752
Alignment:
| Q |
56 |
catgatactagtagaaggatacgttgcagccttcagcattggttcaaccatctgcatgggaaaacagaacat |
127 |
Q |
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| T |
35067823 |
catgatactagtagaaggatacgtcgcagccttcagtattggttcaaccatctgcaagggaaaacagaacat |
35067752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 4299366 - 4299396
Alignment:
| Q |
194 |
aaccaagtgattgggctcaagtggttaatga |
224 |
Q |
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| T |
4299366 |
aaccaagtgattgggctcaagtggttaatga |
4299396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 25675783 - 25675815
Alignment:
| Q |
192 |
gtaaccaagtgattgggctcaagtggttaatga |
224 |
Q |
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| T |
25675783 |
gtaaccaagtgattgggctcaattggttaatga |
25675815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 24978714 - 24978745
Alignment:
| Q |
193 |
taaccaagtgattgggctcaagtggttaatga |
224 |
Q |
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| T |
24978714 |
taaccaagtgattgggctcaagtggttaatga |
24978745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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