View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_64 (Length: 221)
Name: NF6978_low_64
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42706587 - 42706800
Alignment:
| Q |
1 |
tcaggaggcaaagcccctgatcagggtttcactcaggctcacactcctccacccaagactcacatctacaacaatgcaca-gaaaaccaatcactctgag |
99 |
Q |
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| T |
42706587 |
tcaggaggcaaagcccctgatcagggtttcactcaggctcacactcctccacccaagactcacatctacaacaatgctcaaggaaaccaatcactataag |
42706686 |
T |
|
| Q |
100 |
tctctttacaactcatgagccctactacagcctcaagaacaaatatctagaaagcgtgaagctcaaatgcctatgaagaaacaaatggaagttacagaca |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
42706687 |
tctctttacaacgcatgagccctactacagcctcaaggaaaaatatctagaaagcgtgaagctcaaatgcctatgaagagacagatggaaattacagaca |
42706786 |
T |
|
| Q |
200 |
acatggcatcatct |
213 |
Q |
| |
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|||||||||||||| |
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| T |
42706787 |
acatggcatcatct |
42706800 |
T |
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