View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_68 (Length: 203)

Name: NF6978_low_68
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_68
NF6978_low_68
[»] chr3 (15 HSPs)
chr3 (42-184)||(18914193-18914335)
chr3 (62-187)||(41456016-41456142)
chr3 (63-123)||(18136117-18136177)
chr3 (126-184)||(13036915-13036973)
chr3 (132-184)||(18136253-18136306)
chr3 (67-123)||(18129607-18129663)
chr3 (126-184)||(18129733-18129792)
chr3 (151-184)||(31690553-31690586)
chr3 (151-184)||(31943629-31943662)
chr3 (160-188)||(13968801-13968829)
chr3 (160-188)||(13974276-13974304)
chr3 (160-188)||(14084712-14084740)
chr3 (160-188)||(14090113-14090141)
chr3 (160-188)||(24123171-24123199)
chr3 (160-188)||(49399654-49399682)
[»] scaffold0026 (1 HSPs)
scaffold0026 (62-188)||(12745-12872)
[»] scaffold0634 (1 HSPs)
scaffold0634 (62-188)||(2747-2874)
[»] scaffold1773 (1 HSPs)
scaffold1773 (72-188)||(153-269)
[»] chr7 (13 HSPs)
chr7 (72-188)||(13742686-13742803)
chr7 (72-188)||(13123851-13123967)
chr7 (72-187)||(13006489-13006604)
chr7 (72-188)||(12710780-12710896)
chr7 (126-184)||(12694777-12694835)
chr7 (126-184)||(15142390-15142448)
chr7 (151-184)||(1612809-1612842)
chr7 (132-184)||(14945802-14945856)
chr7 (132-184)||(15373395-15373449)
chr7 (126-184)||(16073896-16073954)
chr7 (130-184)||(16476067-16476121)
chr7 (160-188)||(4280144-4280172)
chr7 (160-188)||(19616476-19616504)
[»] chr2 (7 HSPs)
chr2 (72-188)||(26582856-26582973)
chr2 (126-184)||(20914263-20914321)
chr2 (74-188)||(23169179-23169294)
chr2 (74-188)||(23580436-23580551)
chr2 (160-188)||(200822-200850)
chr2 (160-188)||(6744292-6744320)
chr2 (160-188)||(27367551-27367579)
[»] chr6 (9 HSPs)
chr6 (72-187)||(12167420-12167535)
chr6 (72-187)||(19877513-19877628)
chr6 (72-187)||(19883289-19883404)
chr6 (72-188)||(29615079-29615195)
chr6 (72-187)||(19286329-19286444)
chr6 (72-187)||(19786751-19786866)
chr6 (151-184)||(19439888-19439921)
chr6 (126-182)||(23105384-23105440)
chr6 (160-188)||(24562463-24562491)
[»] chr1 (7 HSPs)
chr1 (72-187)||(41110997-41111112)
chr1 (63-123)||(20941657-20941717)
chr1 (132-184)||(20941793-20941846)
chr1 (126-184)||(21698285-21698344)
chr1 (126-184)||(23631145-23631203)
chr1 (160-188)||(21542237-21542265)
chr1 (160-188)||(42095871-42095899)
[»] scaffold0249 (2 HSPs)
scaffold0249 (42-123)||(7589-7670)
scaffold0249 (116-184)||(7730-7798)
[»] scaffold0029 (1 HSPs)
scaffold0029 (72-188)||(110939-111055)
[»] chr8 (11 HSPs)
chr8 (72-188)||(19902808-19902924)
chr8 (72-188)||(23865615-23865732)
chr8 (63-123)||(19987990-19988050)
chr8 (110-187)||(17053780-17053858)
chr8 (132-184)||(21282245-21282298)
chr8 (126-184)||(20005554-20005612)
chr8 (130-184)||(22743893-22743947)
chr8 (151-184)||(21669043-21669076)
chr8 (132-183)||(19988126-19988178)
chr8 (160-188)||(23825305-23825333)
chr8 (160-188)||(30766917-30766945)
[»] scaffold0117 (1 HSPs)
scaffold0117 (72-188)||(9512-9628)
[»] chr5 (12 HSPs)
chr5 (72-187)||(23527632-23527747)
chr5 (63-123)||(22232436-22232496)
chr5 (130-184)||(10035305-10035359)
chr5 (130-184)||(21901795-21901849)
chr5 (131-184)||(18819096-18819149)
chr5 (130-184)||(21869484-21869538)
chr5 (130-184)||(21873764-21873818)
chr5 (135-184)||(22232575-22232625)
chr5 (126-184)||(25013745-25013803)
chr5 (160-188)||(1857471-1857499)
chr5 (152-184)||(21624719-21624751)
chr5 (160-188)||(21675439-21675467)
[»] scaffold0348 (3 HSPs)
scaffold0348 (63-123)||(1527-1587)
scaffold0348 (132-184)||(1663-1716)
scaffold0348 (151-184)||(3107-3140)
[»] chr4 (6 HSPs)
chr4 (63-123)||(14555881-14555941)
chr4 (72-188)||(8046777-8046893)
chr4 (127-184)||(30237938-30237995)
chr4 (130-184)||(14821545-14821599)
chr4 (132-184)||(14556017-14556070)
chr4 (151-184)||(26077669-26077702)
[»] scaffold0077 (2 HSPs)
scaffold0077 (68-121)||(17972-18025)
scaffold0077 (68-121)||(23605-23658)
[»] scaffold0001 (1 HSPs)
scaffold0001 (72-188)||(174440-174557)
[»] scaffold0011 (2 HSPs)
scaffold0011 (132-184)||(152546-152599)
scaffold0011 (160-188)||(174529-174557)
[»] scaffold0108 (1 HSPs)
scaffold0108 (128-184)||(45691-45747)
[»] scaffold0535 (1 HSPs)
scaffold0535 (132-182)||(5969-6020)
[»] scaffold0244 (1 HSPs)
scaffold0244 (126-184)||(13789-13847)
[»] scaffold0049 (1 HSPs)
scaffold0049 (130-184)||(42870-42924)
[»] scaffold1853 (1 HSPs)
scaffold1853 (132-184)||(741-793)
[»] scaffold0180 (1 HSPs)
scaffold0180 (130-184)||(12616-12670)
[»] scaffold0167 (1 HSPs)
scaffold0167 (126-184)||(20024-20082)
[»] scaffold0028 (2 HSPs)
scaffold0028 (158-188)||(52350-52380)
scaffold0028 (160-188)||(46947-46975)
[»] scaffold0005 (1 HSPs)
scaffold0005 (130-184)||(18110-18164)
[»] scaffold0266 (1 HSPs)
scaffold0266 (151-184)||(23183-23216)
[»] scaffold0106 (1 HSPs)
scaffold0106 (160-188)||(38582-38610)
[»] scaffold0076 (2 HSPs)
scaffold0076 (160-188)||(30113-30141)
scaffold0076 (160-188)||(35514-35542)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 18914335 - 18914193
Alignment:
Q  42 atcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtc 141  Q
    ||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| || || ||||||||||    
T  18914335 atcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttggaattgcggagttgtaagtc 18914236  T
Q  142 atatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  18914235 atatgaaacatatgtattgttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 41456016 - 41456142
Alignment:
Q  62 attgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tgg 160  Q
    ||||||||||||||||||| | |||||||||||| |||||| | |||||||| |||||| ||  |  || || ||||||||||||||||||||| | | |    
T  41456016 attgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttgagttacggagtagtaagtcatatgaaacatatgcattag 41456115  T
Q  161 ttgagttgtatgtagatatacacaggt 187  Q
    |||||||||||||||||||||||||||    
T  41456116 ttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 18136117 - 18136177
Alignment:
Q  63 ttgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttgga 18136177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 13036915 - 13036973
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  13036915 tgtggggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 13036973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 18136253 - 18136306
Alignment:
Q  132 gttgtaagtcatatgaaa-catatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  18136253 gttgtaagtcatatgaaaacatatgcatggttaagttgtatgtagatatacaca 18136306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 18129607 - 18129663
Alignment:
Q  67 atgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||| | ||||||||||||||||||| | |||||||| |||||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgttgga 18129663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 18129733 - 18129792
Alignment:
Q  126 tgtggggttgtaagtcatatgaaaca-tatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||| |||||||||||||||||| | |||| |||||| |||||||||||||||||||||    
T  18129733 tgtggagttgtaagtcatatgaaaaaatatgcatggttaagttgtatgtagatatacaca 18129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 31690553 - 31690586
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  31690553 atatgtatggttgagttgtatgtagatatacaca 31690586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 31943662 - 31943629
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  31943662 atatgtatggttgagttgtatgtagatatacaca 31943629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 13968801 - 13968829
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  13968801 gttgagttgtatgtagatatacacaggtt 13968829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 13974276 - 13974304
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  13974276 gttgagttgtatgtagatatacacaggtt 13974304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 14084740 - 14084712
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  14084740 gttgagttgtatgtagatatacacaggtt 14084712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 14090141 - 14090113
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  14090141 gttgagttgtatgtagatatacacaggtt 14090113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 24123171 - 24123199
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  24123171 gttgagttgtatgtagatatacacaggtt 24123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 49399682 - 49399654
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  49399682 gttgagttgtatgtagatatacacaggtt 49399654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 12745 - 12872
Alignment:
Q  62 attgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgt-ggggttgtaagtcatatgaaacatatgtatgg 160  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||| | | || || ||||||||||||| | |||||| | |    
T  12745 attgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaagtcatatgagatatatgtgtag 12844  T
Q  161 ttgagttgtatgtagatatacacaggtt 188  Q
    ||||||||||||||||||||||||||||    
T  12845 ttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 2874 - 2747
Alignment:
Q  62 attgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tgg 160  Q
    |||||||||| |||||||||| |||||||||||| ||||||   ||||||||||||||| ||  || || || ||||||||||||||||||||||| | |    
T  2874 attgaatgaatttgatgtatgcgcataattataaataattgtctatgttctggattgtttgagttgcggagtagtaagtcatatgaaacatatgtattag 2775  T
Q  161 ttgagttgtatgtagatatacacaggtt 188  Q
    ||||||||||||||||||||||||||||    
T  2774 ttgagttgtatgtagatatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 269 - 153
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgt-atggttgagttgta 170  Q
    |||||||| ||||||||||||||| |||||| | ||||||||||||||| ||  ||||| || ||||||||||||||| |||||| || |||||||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt-gagctgtggagtagtaagtcatatgaaatatatgtaatagttgagttgta 171  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  170 tgtagatatacacaggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 5e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 13742803 - 13742686
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgt-atggttgagttgta 170  Q
    ||||||||||| |||||||||||| |||||| | ||||||||||||||| ||  ||||| || |||||||||||||||||||||| || || ||||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgtggagtagtaagtcatatgaaacatatgtaatagtcgagttgta 13742704  T
Q  171 tgtagatatacacaggtt 188  Q
    ||| ||||||||||||||    
T  13742703 tgttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 13123851 - 13123967
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | |||||||| ||||| | |  ||||| ||  |||||||||||||| ||||||| | |||||||||||    
T  13123851 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtcg-agttgtggagtattaagtcatatgaaatatatgtagtagttgagttgta 13123949  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  13123950 tgtagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 13006604 - 13006489
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  ||||| || ||||||||||| | ||||||||| |||| ||||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgtggagtagtaagtcatattatacatatgtagtggtcgagttgta 13006506  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  13006505 tgtagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 12710780 - 12710896
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | |||||||| ||||| | |  | ||| ||  |||||||||||||| ||||||| | |||||||||||    
T  12710780 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtcg-agttatggagtattaagtcatatgaaatatatgtagtagttgagttgta 12710878  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  12710879 tgtagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 12694835 - 12694777
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  12694835 tgtggggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 12694777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 15142448 - 15142390
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || || ||||||||||||||||||||||    
T  15142448 tgtggggttgtaagtcatattatatatatgcattgtggagttgtatgtagatatacaca 15142390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 1612842 - 1612809
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  1612842 atatgtatggttgagttgtatgtagatatacaca 1612809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 14945802 - 14945856
Alignment:
Q  132 gttgtaagtcatatgaaa--catatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||  |||||| || ||| |||||||||||||||||||||    
T  14945802 gttgtaagtcatatgaaaaacatatgcattgtttagttgtatgtagatatacaca 14945856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 15373395 - 15373449
Alignment:
Q  132 gttgtaagtcatatgaaa--catatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||  |||||| || ||| |||||||||||||||||||||    
T  15373395 gttgtaagtcatatgaaaaacatatgcattgtttagttgtatgtagatatacaca 15373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 16073896 - 16073954
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||| ||||||||||| | | ||||| |  |||||||||||||||||||||||||    
T  16073896 tgtggggtggtaagtcatattatatatatgcactgttgagttgtatgtagatatacaca 16073954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 16476067 - 16476121
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||| || | |||||||||||||||||||||||    
T  16476067 gggttgtaagtcatattatatatatgcattgatgagttgtatgtagatatacaca 16476121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 4280172 - 4280144
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  4280172 gttgagttgtatgtagatatacacaggtt 4280144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 19616504 - 19616476
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  19616504 gttgagttgtatgtagatatacacaggtt 19616476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 26582973 - 26582856
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgt-atggttgagttgta 170  Q
    ||||||||||| |||||||||||| |||||| | ||||||||||||||| ||  || || || ||||||||||| |||||||||| || ||| |||||||    
T  26582973 attgatgtatgcgcataattataaataattgtgtatgttctggattgtttgagttgcggagtagtaagtcatataaaacatatgtaatagttaagttgta 26582874  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  26582873 tgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 20914263 - 20914321
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  20914263 tgtggggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 20914321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 23169179 - 23169294
Alignment:
Q  74 tgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgtatg 172  Q
    ||||||||| |||||||||||| | |||| | |||| |||||||||| ||  || || || |||||| |||||||| ||||||| | || ||||||||||    
T  23169179 tgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttgagttgcggagtagtaagttatatgaaatatatgtattagtggagttgtatg 23169278  T
Q  173 tagatatacacaggtt 188  Q
    | ||||||||| ||||    
T  23169279 tggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 23580436 - 23580551
Alignment:
Q  74 tgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgtatg 172  Q
    ||||||||| |||||||||||| | |||| | |||| |||||||||| ||  || || || |||||| |||||||| ||||||| | || ||||||||||    
T  23580436 tgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttgagttgcggagtagtaagttatatgaaatatatgtattagtggagttgtatg 23580535  T
Q  173 tagatatacacaggtt 188  Q
    | ||||||||| ||||    
T  23580536 tggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 200850 - 200822
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  200850 gttgagttgtatgtagatatacacaggtt 200822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 6744292 - 6744320
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  6744292 gttgagttgtatgtagatatacacaggtt 6744320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 27367551 - 27367579
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  27367551 gttgagttgtatgtagatatacacaggtt 27367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 12167535 - 12167420
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  ||||| || ||||||||||||| ||||||||| |||| ||||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgta 12167437  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  12167436 tgtagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 19877628 - 19877513
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  ||||| || ||||||||||||| ||||||||| |||| ||||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgta 19877530  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  19877529 tgtagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 19883404 - 19883289
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  ||||| || ||||||||||||| ||||||||| |||| ||||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgta 19883306  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  19883305 tgtagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 29615079 - 29615195
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    ||||||||||||| |||||||||| |||||| | |||||||||||||||| |  || || |  ||||||||||||||||||||||| | || ||||||||    
T  29615079 attgatgtatgtgaataattataaataattgtgtatgttctggattgttg-agttgcggagcagtaagtcatatgaaacatatgtaatagtcgagttgta 29615177  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  29615178 tgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 19286444 - 19286329
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  ||||| || ||||||||||| | ||||||||| |||| ||||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgtggagtagtaagtcatattatacatatgtagtggtcgagttgta 19286346  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  19286345 tgtagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 19786751 - 19786866
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  | ||| || ||||||||||||| ||||||||| | || ||||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttatggagtagtaagtcatatgatacatatgtagtagtcgagttgta 19786849  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  19786850 tgtagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 19439921 - 19439888
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  19439921 atatgtatggttgagttgtatgtagatatacaca 19439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 23105440 - 23105384
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatataca 182  Q
    |||||||||||||||||||| | | ||||| || ||| |||||||||||||||||||    
T  23105440 tgtggggttgtaagtcatattatatatatgcattgttcagttgtatgtagatataca 23105384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 24562491 - 24562463
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  24562491 gttgagttgtatgtagatatacacaggtt 24562463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 41111112 - 41110997
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | | | ||||||||||| ||  ||||| || ||||||||||||| ||||||||| |||| ||||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgta 41111014  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  41111013 tgtagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 20941657 - 20941717
Alignment:
Q  63 ttgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttgga 20941717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 20941793 - 20941846
Alignment:
Q  132 gttgtaagtcatatgaaa-catatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||| |||||| || ||| |||||||||||||||||||||    
T  20941793 gttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 21698344 - 21698285
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttg-agttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || |||| |||||||||||||||||||||    
T  21698344 tgtggggttgtaagtcatattatatatatgcattgttggagttgtatgtagatatacaca 21698285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 23631203 - 23631145
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||| |||||||||||||| | | ||||| || ||| |||||||||||||||||||||    
T  23631203 tgtggagttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 23631145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 21542265 - 21542237
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  21542265 gttgagttgtatgtagatatacacaggtt 21542237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 42095871 - 42095899
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  42095871 gttgagttgtatgtagatatacacaggtt 42095899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 7589 - 7670
Alignment:
Q  42 atcaagtgattatatattacattgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    ||||||||| |||||| ||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  7589 atcaagtgaatatatagtatgttgaatgaaattgatgtatgagcataattataattaattgggtatgttctgggttgttgga 7670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 7730 - 7798
Alignment:
Q  116 ttgttggaagtgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||| || || |||| ||||||||||||||||||| || ||| |||||||||||||||||||||    
T  7730 ttgttggaattgcggagttgcaagtcatatgaaacatatgcattgttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 111055 - 110939
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||| ||||||||| |||||| | | |||||||||||| | |  ||||| || ||||||||||||||| ||||||| | |||||||||||    
T  111055 attgatgtatgtgcgtaattataaataattgtgtaggttctggattgtcg-agttgtggagtagtaagtcatatgaaatatatgtaatagttgagttgta 110957  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  110956 tgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 19902808 - 19902924
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||| ||||||| |||||| | |||||||||||||| | |  ||||| ||  |||||||||||||| ||||||| | |||||||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgtcg-agttgtggagtattaagtcatatgaaatatatgtagtagttgagttgta 19902906  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  19902907 tgtagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 23865732 - 23865615
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtc-atatgaaacatatgta-tggttgagttgt 169  Q
    |||||||||||||||||||||||| |||||| | |||||||| |||||| ||  |  || || ||||||| |||||||| ||||| | | ||||||||||    
T  23865732 attgatgtatgtgcataattataaataattgtgtatgttctgaattgtt-gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttgt 23865634  T
Q  170 atgtagatatacacaggtt 188  Q
    |||||||||||||||||||    
T  23865633 atgtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 19987990 - 19988050
Alignment:
Q  63 ttgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||||||||| |||||||| |||||||||| | ||||||||||||| ||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattggtgga 19988050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 17053858 - 17053780
Alignment:
Q  110 tctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgtatgtagatatacacaggt 187  Q
    ||||||||||| ||  ||||| || ||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  17053858 tctggattgtttgagttgtggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 21282298 - 21282245
Alignment:
Q  132 gttgtaagtcatatgaa-acatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  21282298 gttgtaagtcatatgtacatatatgtatggttgagttgtatgtagatatacaca 21282245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 20005554 - 20005612
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || ||| |||||||||||||||||||||    
T  20005554 tgtggggttgtaagtcatattatatatatgcattgttaagttgtatgtagatatacaca 20005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 22743947 - 22743893
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||   | ||||| || |||||||||||||||||||||||||    
T  22743947 gggttgtaagtcatattctatatatgcattgttgagttgtatgtagatatacaca 22743893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 21669076 - 21669043
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||||||| |||||||||    
T  21669076 atatgtatggttgagttgtatgtatatatacaca 21669043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 19988126 - 19988178
Alignment:
Q  132 gttgtaagtcatatgaaa-catatgtatggttgagttgtatgtagatatacac 183  Q
    |||||||| ||||||||| |||||| || ||| ||||||||||||||||||||    
T  19988126 gttgtaagccatatgaaaacatatgcattgttaagttgtatgtagatatacac 19988178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 23825333 - 23825305
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  23825333 gttgagttgtatgtagatatacacaggtt 23825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 30766917 - 30766945
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  30766917 gttgagttgtatgtagatatacacaggtt 30766945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 9512 - 9628
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||| ||||||| ||||||   |||||||||||||| | |  ||||| ||  |||||||||||||| ||||||| | |||||||||||    
T  9512 attgatgtatgtgcatgattataaataattgtatatgttctggattgtcg-agttgtggagtattaagtcatatgaaatatatgtagtagttgagttgta 9610  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  9611 tgtagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 23527747 - 23527632
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| |   || ||||||| || ||  ||||| || ||||||||||||| ||||||||| |||| ||||||||    
T  23527747 attgatgtatgtgcataattataaataattgtgtcagt-ctggattatttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgta 23527649  T
Q  171 tgtagatatacacaggt 187  Q
    |||||||||||||||||    
T  23527648 tgtagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 22232436 - 22232496
Alignment:
Q  63 ttgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgttgga 22232496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 10035359 - 10035305
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  10035359 gggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 10035305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 21901795 - 21901849
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  21901795 gggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 21901849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 18819149 - 18819096
Alignment:
Q  131 ggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  18819149 ggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 18819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 21869484 - 21869538
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||| |||||||||| | | ||||| || |||||||||||||||||||||||||    
T  21869484 gggttataagtcatattatatatatgcattgttgagttgtatgtagatatacaca 21869538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 21873764 - 21873818
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||| |||||||||| | | ||||| || |||||||||||||||||||||||||    
T  21873764 gggttataagtcatattatatatatgcattgttgagttgtatgtagatatacaca 21873818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 22232575 - 22232625
Alignment:
Q  135 gtaagtcatatgaaa-catatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||| |||||| || ||| |||||||||||||||||||||    
T  22232575 gtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 25013803 - 25013745
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||| | | | ||||| || ||| |||||||||||||||||||||    
T  25013803 tgtggggttgtaagtcattttatatatatgcattgttaagttgtatgtagatatacaca 25013745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 1857471 - 1857499
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  1857471 gttgagttgtatgtagatatacacaggtt 1857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 21624751 - 21624719
Alignment:
Q  152 tatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||| |||||||||||||||||||||||||    
T  21624751 tatgtattgttgagttgtatgtagatatacaca 21624719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 21675439 - 21675467
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  21675439 gttgagttgtatgtagatatacacaggtt 21675467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 1527 - 1587
Alignment:
Q  63 ttgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgttgga 1587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 1663 - 1716
Alignment:
Q  132 gttgtaagtcatatgaaa-catatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||| |||||| || ||| |||||||||||||||||||||    
T  1663 gttgtaagtcatatgaaaacatatgcattgttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 3140 - 3107
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  3140 atatgtatggttgagttgtatgtagatatacaca 3107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 14555881 - 14555941
Alignment:
Q  63 ttgaatgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttgga 123  Q
    |||||||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgttgga 14555941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 8046777 - 8046893
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgta-tggttgagttgta 170  Q
    |||||||| ||||||||||||||| |||||| | ||| | ||||||  || |  ||||| || ||||||||||||||| ||||||| | || ||||||||    
T  8046777 attgatgtgtgtgcataattataaataattgtgtatgatttggattactg-agttgtggagtagtaagtcatatgaaatatatgtaatagtcgagttgta 8046875  T
Q  171 tgtagatatacacaggtt 188  Q
    ||||||||||||||||||    
T  8046876 tgtagatatacacaggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 30237995 - 30237938
Alignment:
Q  127 gtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  30237995 gtggggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 30237938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 14821599 - 14821545
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||  || |||||||||||||||||||||||||    
T  14821599 gggttgtaagtcatattatatatattcattgttgagttgtatgtagatatacaca 14821545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 14556017 - 14556070
Alignment:
Q  132 gttgtaagtcatatgaaa-catatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||| |||||| ||  || |||||||||||||||||||||    
T  14556017 gttgtaagtcatatgaaaacatatgcattattaagttgtatgtagatatacaca 14556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 26077669 - 26077702
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||| ||||||||||||||||||||||||||    
T  26077669 atatgtagggttgagttgtatgtagatatacaca 26077702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 17972 - 18025
Alignment:
Q  68 tgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttg 121  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttg 18025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 23605 - 23658
Alignment:
Q  68 tgaaattgatgtatgtgcataattataattaattgggcatgttctggattgttg 121  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttg 23658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 174440 - 174557
Alignment:
Q  72 attgatgtatgtgcataattataattaattgggcatgttctggattgttggaagtgtggggttgtaagtcatatgaaacatatgt-atggttgagttgta 170  Q
    |||||||||||||||||||||||| |||||| | ||||||||||||||| ||  || || |  ||||||||| ||||| |||||| || || || |||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtttgagttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgta 174539  T
Q  171 tgtagatatacacaggtt 188  Q
    |||||| ||||| |||||    
T  174540 tgtagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 152599 - 152546
Alignment:
Q  132 gttgtaagtcatatgaa-acatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  152599 gttgtaagtcatatgtacatatatgtatggttgagttgtatgtagatatacaca 152546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 174529 - 174557
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  174529 gttgagttgtatgtagatatacacaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 45747 - 45691
Alignment:
Q  128 tggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  45747 tggggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 45691  T

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Target: scaffold0535 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 5969 - 6020
Alignment:
Q  132 gttgtaagtcatatgaa-acatatgtatggttgagttgtatgtagatataca 182  Q
    ||||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  5969 gttgtaagtcatatgtacatatatgtatggttgagttgtatgtagatataca 6020  T

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Target: scaffold0244 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 13847 - 13789
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| | | ||||| || ||||| |||||||||||||||||||    
T  13847 tgtggggttgtaagtcatattatatatatgcattgttgatttgtatgtagatatacaca 13789  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 42870 - 42924
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||| || |||||||||||||||||||||||||    
T  42870 gggttgtaagtcatattatatatatgcattgttgagttgtatgtagatatacaca 42924  T

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Target: scaffold1853 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1853
Description:

Target: scaffold1853; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 741 - 793
Alignment:
Q  132 gttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||| | ||||||| ||  ||||||||||||||||||||||||    
T  741 gttgtaagtcatattatacatatgcattcttgagttgtatgtagatatacaca 793  T

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Target: scaffold0180 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 12670 - 12616
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||| || |||||||||||||||||||| ||||    
T  12670 gggttgtaagtcatattatatatatgcattgttgagttgtatgtagatattcaca 12616  T

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Target: scaffold0167 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 20082 - 20024
Alignment:
Q  126 tgtggggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||| |||||||||||| | | | ||||| || |||||||||||||||||||||||||    
T  20082 tgtggagttgtaagtcatgttatatatatgcattgttgagttgtatgtagatatacaca 20024  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 52350 - 52380
Alignment:
Q  158 tggttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||||    
T  52350 tggttgagttgtatgtagatatacacaggtt 52380  T

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Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 46947 - 46975
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  46947 gttgagttgtatgtagatatacacaggtt 46975  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 18110 - 18164
Alignment:
Q  130 gggttgtaagtcatatgaaacatatgtatggttgagttgtatgtagatatacaca 184  Q
    |||||||||||||||| | | ||||  || |||||||||||||||||||||||||    
T  18110 gggttgtaagtcatattatatatattcattgttgagttgtatgtagatatacaca 18164  T

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Target: scaffold0266 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 23216 - 23183
Alignment:
Q  151 atatgtatggttgagttgtatgtagatatacaca 184  Q
    ||||| ||||||||||||||||||||||||||||    
T  23216 atatgcatggttgagttgtatgtagatatacaca 23183  T

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Target: scaffold0106 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 38610 - 38582
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  38610 gttgagttgtatgtagatatacacaggtt 38582  T

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Target: scaffold0076 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 30113 - 30141
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  30113 gttgagttgtatgtagatatacacaggtt 30141  T

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Target: scaffold0076; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 35514 - 35542
Alignment:
Q  160 gttgagttgtatgtagatatacacaggtt 188  Q
    |||||||||||||||||||||||||||||    
T  35514 gttgagttgtatgtagatatacacaggtt 35542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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