View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_69 (Length: 203)

Name: NF6978_low_69
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_69
NF6978_low_69
[»] chr3 (17 HSPs)
chr3 (45-187)||(41456000-41456142)
chr3 (42-184)||(18914193-18914335)
chr3 (62-119)||(18136117-18136174)
chr3 (148-184)||(18900193-18900229)
chr3 (150-188)||(13968791-13968829)
chr3 (150-188)||(13974266-13974304)
chr3 (150-188)||(14084712-14084750)
chr3 (150-188)||(14090113-14090151)
chr3 (150-184)||(16802407-16802441)
chr3 (150-184)||(17157246-17157280)
chr3 (150-188)||(24123161-24123199)
chr3 (150-184)||(24191947-24191981)
chr3 (150-188)||(49399654-49399692)
chr3 (128-183)||(19235929-19235988)
chr3 (128-184)||(19443658-19443715)
chr3 (148-184)||(18889154-18889190)
chr3 (151-187)||(42109307-42109342)
[»] scaffold0634 (1 HSPs)
scaffold0634 (42-188)||(2747-2893)
[»] chr7 (13 HSPs)
chr7 (73-188)||(13742686-13742801)
chr7 (73-187)||(13006489-13006602)
chr7 (73-188)||(13123853-13123967)
chr7 (73-188)||(12710782-12710896)
chr7 (150-188)||(4280144-4280182)
chr7 (150-184)||(11383796-11383830)
chr7 (150-184)||(11390284-11390318)
chr7 (150-184)||(14169486-14169520)
chr7 (150-184)||(14178960-14178994)
chr7 (150-188)||(19616476-19616514)
chr7 (150-184)||(20328206-20328240)
chr7 (128-188)||(12591570-12591631)
chr7 (128-184)||(31154554-31154610)
[»] chr2 (10 HSPs)
chr2 (73-188)||(26582856-26582971)
chr2 (71-188)||(23169177-23169294)
chr2 (71-188)||(23580434-23580551)
chr2 (128-183)||(20724221-20724277)
chr2 (150-188)||(200822-200860)
chr2 (150-188)||(6744282-6744320)
chr2 (150-184)||(23089988-23090022)
chr2 (150-184)||(23102416-23102450)
chr2 (150-188)||(27367541-27367579)
chr2 (148-184)||(23878024-23878060)
[»] chr6 (16 HSPs)
chr6 (85-188)||(29615093-29615195)
chr6 (73-187)||(12167420-12167533)
chr6 (73-187)||(19786753-19786866)
chr6 (73-187)||(19877513-19877626)
chr6 (73-187)||(19883289-19883402)
chr6 (73-187)||(19286329-19286442)
chr6 (128-188)||(11289537-11289598)
chr6 (150-184)||(10582794-10582828)
chr6 (150-184)||(18788544-18788578)
chr6 (150-184)||(18799524-18799558)
chr6 (150-184)||(21566145-21566179)
chr6 (150-188)||(24562463-24562501)
chr6 (128-183)||(9099932-9099991)
chr6 (128-183)||(29097000-29097059)
chr6 (148-184)||(24513782-24513817)
chr6 (148-184)||(31251557-31251593)
[»] scaffold0026 (1 HSPs)
scaffold0026 (42-188)||(12726-12872)
[»] chr8 (13 HSPs)
chr8 (73-188)||(23865615-23865730)
chr8 (73-188)||(19902810-19902924)
chr8 (109-187)||(17053780-17053858)
chr8 (62-117)||(19987990-19988045)
chr8 (128-184)||(10607120-10607178)
chr8 (150-188)||(23825305-23825343)
chr8 (150-184)||(25111027-25111061)
chr8 (150-188)||(30766907-30766945)
chr8 (115-183)||(19988110-19988178)
chr8 (148-184)||(14057563-14057599)
chr8 (151-187)||(25624680-25624715)
chr8 (151-187)||(33089001-33089036)
chr8 (128-183)||(41009392-41009448)
[»] scaffold0001 (1 HSPs)
scaffold0001 (73-188)||(174442-174557)
[»] chr1 (9 HSPs)
chr1 (73-187)||(41110997-41111110)
chr1 (62-119)||(20941657-20941714)
chr1 (115-184)||(20941777-20941846)
chr1 (148-184)||(19664085-19664121)
chr1 (115-184)||(20824280-20824349)
chr1 (150-188)||(21542237-21542275)
chr1 (150-188)||(42095861-42095899)
chr1 (151-187)||(21734429-21734464)
chr1 (151-187)||(21986921-21986956)
[»] scaffold1773 (1 HSPs)
scaffold1773 (83-188)||(153-257)
[»] chr5 (9 HSPs)
chr5 (73-187)||(23527632-23527745)
chr5 (62-119)||(22232436-22232493)
chr5 (150-188)||(1857461-1857499)
chr5 (150-188)||(21675429-21675467)
chr5 (115-184)||(22232556-22232625)
chr5 (150-184)||(23112694-23112728)
chr5 (128-183)||(24930789-24930848)
chr5 (128-184)||(34829216-34829273)
chr5 (150-182)||(22439683-22439715)
[»] scaffold0029 (1 HSPs)
scaffold0029 (73-188)||(110939-111053)
[»] chr4 (6 HSPs)
chr4 (83-188)||(8046789-8046893)
chr4 (62-119)||(14555881-14555938)
chr4 (115-184)||(14556001-14556070)
chr4 (128-184)||(1650990-1651047)
chr4 (128-184)||(15407097-15407154)
chr4 (128-183)||(15325062-15325118)
[»] scaffold0117 (1 HSPs)
scaffold0117 (73-188)||(9514-9628)
[»] scaffold0348 (2 HSPs)
scaffold0348 (115-184)||(1647-1716)
scaffold0348 (62-119)||(1527-1584)
[»] scaffold0249 (2 HSPs)
scaffold0249 (115-184)||(7730-7798)
scaffold0249 (42-119)||(7589-7667)
[»] scaffold0097 (1 HSPs)
scaffold0097 (128-183)||(28050-28106)
[»] scaffold0077 (3 HSPs)
scaffold0077 (67-119)||(17972-18024)
scaffold0077 (67-119)||(23605-23657)
scaffold0077 (150-182)||(4576-4608)
[»] scaffold1853 (1 HSPs)
scaffold1853 (122-184)||(732-793)
[»] scaffold1427 (1 HSPs)
scaffold1427 (150-184)||(1025-1059)
[»] scaffold1299 (1 HSPs)
scaffold1299 (150-184)||(125-159)
[»] scaffold0476 (1 HSPs)
scaffold0476 (150-184)||(4257-4291)
[»] scaffold0334 (1 HSPs)
scaffold0334 (150-184)||(8664-8698)
[»] scaffold0301 (1 HSPs)
scaffold0301 (150-184)||(3397-3431)
[»] scaffold0124 (1 HSPs)
scaffold0124 (150-184)||(36775-36809)
[»] scaffold0107 (1 HSPs)
scaffold0107 (150-184)||(41574-41608)
[»] scaffold0106 (3 HSPs)
scaffold0106 (150-188)||(38582-38620)
scaffold0106 (124-184)||(46688-46748)
scaffold0106 (124-184)||(50961-51021)
[»] scaffold0078 (1 HSPs)
scaffold0078 (150-184)||(17383-17417)
[»] scaffold0076 (2 HSPs)
scaffold0076 (150-188)||(30103-30141)
scaffold0076 (150-188)||(35504-35542)
[»] scaffold0028 (1 HSPs)
scaffold0028 (150-188)||(46937-46975)
[»] scaffold0025 (1 HSPs)
scaffold0025 (150-184)||(15414-15448)
[»] scaffold0011 (1 HSPs)
scaffold0011 (150-188)||(174519-174557)
[»] scaffold0023 (1 HSPs)
scaffold0023 (128-184)||(153275-153332)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 41456000 - 41456142
Alignment:
Q  45 aagtgaatatataactattgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatat 144  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||| ||||||||    
T  41456000 aagtgaatatacaactattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttgagttacggagtagtaagtcatat 41456099  T
Q  145 gaaacatatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  41456100 gaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 18914335 - 18914193
Alignment:
Q  42 atcaagtgaatatataac-tattgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtc 140  Q
    ||||||||||||||||   | |||||||||| ||||||| | |||||||||||| ||||||||| |||||||||||||| || ||||||||| || ||||    
T  18914335 atcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgttggaattgcggagttgtaagtc 18914236  T
Q  141 atatgaaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||||| ||| ||  |||||||||||||||||||||    
T  18914235 atatgaaacatatgtatt-gttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  62 ttgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    |||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 18900229 - 18900193
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||||| ||||||||||||||||||||||    
T  18900229 acatatgcattagttgagttgtatgtagatatacaca 18900193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 13968791 - 13968829
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  13968791 atatgcatttgttgagttgtatgtagatatacacaggtt 13968829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 13974266 - 13974304
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  13974266 atatgcatttgttgagttgtatgtagatatacacaggtt 13974304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 14084750 - 14084712
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  14084750 atatgcatttgttgagttgtatgtagatatacacaggtt 14084712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 14090151 - 14090113
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  14090151 atatgcatttgttgagttgtatgtagatatacacaggtt 14090113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 16802407 - 16802441
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  16802407 atatgcattagttgagttgtatgtagatatacaca 16802441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 17157280 - 17157246
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  17157280 atatgcattagttgagttgtatgtagatatacaca 17157246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 24123161 - 24123199
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24123161 atatgcatttgttgagttgtatgtagatatacacaggtt 24123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 24191981 - 24191947
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  24191981 atatgcattagttgagttgtatgtagatatacaca 24191947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 49399692 - 49399654
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  49399692 atatgcatttgttgagttgtatgtagatatacacaggtt 49399654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 19235929 - 19235988
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 183  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  19235929 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 19235988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 19443715 - 19443658
Alignment:
Q  128 ggagtagtgagtcatatgaaacatatgcattagtcg-agttgtatgtagatatacaca 184  Q
    ||||| |||||||||||   |||||||||||||| | |||||||||||||||||||||    
T  19443715 ggagtggtgagtcatatagtacatatgcattagttggagttgtatgtagatatacaca 19443658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 18889190 - 18889154
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| | ||||||||||||||||||||||    
T  18889190 acatatgcattacttgagttgtatgtagatatacaca 18889154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 42109342 - 42109307
Alignment:
Q  151 tatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42109342 tatgcatt-gtcgagttgtatgtagatatacacaggt 42109307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 2893 - 2747
Alignment:
Q  42 atcaagtgaatatataactattgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtca 141  Q
    |||| |||||||||||| |||||||||||  ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  2893 atcatgtgaatatataattattgaatgaatttgatgtatgcgcataattataaataattgtctatgttctggattgtttgagttgcggagtagtaagtca 2794  T
Q  142 tatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2793 tatgaaacatatgtattagttgagttgtatgtagatatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 13742801 - 13742686
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||    
T  13742801 tgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgtggagtagtaagtcatatgaaacatatgtaatagtcgagttgtatg 13742702  T
Q  173 tagatatacacaggtt 188  Q
    | ||||||||||||||    
T  13742701 ttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 13006602 - 13006489
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||| | ||||||| | | |||||||||||||    
T  13006602 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatattatacatatgtagtggtcgagttgtatg 13006504  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  13006503 tagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 13123853 - 13123967
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | |||||||||||||||||||||| ||||||| |||||  |||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  13123853 tgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttgtggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 13123951  T
Q  173 tagatatacacaggtt 188  Q
    ||||||||||||||||    
T  13123952 tagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 12710782 - 12710896
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | |||||||||||||||||||||| ||||||| |||||  |||||  |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  12710782 tgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttatggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 12710880  T
Q  173 tagatatacacaggtt 188  Q
    ||||||||||||||||    
T  12710881 tagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 4280182 - 4280144
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  4280182 atatgcatttgttgagttgtatgtagatatacacaggtt 4280144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 11383796 - 11383830
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  11383796 atatgcattagttgagttgtatgtagatatacaca 11383830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 11390284 - 11390318
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  11390284 atatgcattagttgagttgtatgtagatatacaca 11390318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 14169486 - 14169520
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  14169486 atatgcatttgtcgagttgtatgtagatatacaca 14169520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 14178960 - 14178994
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  14178960 atatgcatttgtcgagttgtatgtagatatacaca 14178994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 19616514 - 19616476
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  19616514 atatgcatttgttgagttgtatgtagatatacacaggtt 19616476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 20328206 - 20328240
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  20328206 atatgcattagttgagttgtatgtagatatacaca 20328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 12591570 - 12591631
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||| ||||||||||| || ||||||| | |||| ||||||||||||||||||||| ||||    
T  12591570 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacactggtt 12591631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 31154610 - 31154554
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| ||||||||||| |  ||||||||||| |||||||||||||||||||||||||    
T  31154610 ggagtggtgagtcatataagtacatatgcatt-gtcgagttgtatgtagatatacaca 31154554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 26582971 - 26582856
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||  |||||||||    
T  26582971 tgatgtatgcgcataattataaataattgtgtatgttctggattgtttgagttgcggagtagtaagtcatataaaacatatgtaatagttaagttgtatg 26582872  T
Q  173 tagatatacacaggtt 188  Q
    ||||||||||||||||    
T  26582871 tagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 23169177 - 23169294
Alignment:
Q  71 aatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgta 170  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||| |||||||| ||||| |||||| ||||||||    
T  23169177 aatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttgagttgcggagtagtaagttatatgaaatatatgtattagtggagttgta 23169276  T
Q  171 tgtagatatacacaggtt 188  Q
    ||| ||||||||| ||||    
T  23169277 tgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 23580434 - 23580551
Alignment:
Q  71 aatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgta 170  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||| |||||||| ||||| |||||| ||||||||    
T  23580434 aatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttgagttgcggagtagtaagttatatgaaatatatgtattagtggagttgta 23580533  T
Q  171 tgtagatatacacaggtt 188  Q
    ||| ||||||||| ||||    
T  23580534 tgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 20724277 - 20724221
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacac 183  Q
    ||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  20724277 ggagtggtgagtcatatgaatacatatgcattgttggagttgtatgtagatatacac 20724221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 200860 - 200822
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  200860 atatgcatttgttgagttgtatgtagatatacacaggtt 200822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 6744282 - 6744320
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  6744282 atatgcatttgttgagttgtatgtagatatacacaggtt 6744320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 23089988 - 23090022
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  23089988 atatgcattagttgagttgtatgtagatatacaca 23090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 23102416 - 23102450
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  23102416 atatgcattagttgagttgtatgtagatatacaca 23102450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 27367541 - 27367579
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  27367541 atatgcatttgttgagttgtatgtagatatacacaggtt 27367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 23878060 - 23878024
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  23878060 acatacgcattagtggagttgtatgtagatatacaca 23878024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 29615093 - 29615195
Alignment:
Q  85 ataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  29615093 ataattataaataattgtgtatgttctggattgtt-gagttgcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacaca 29615191  T
Q  185 ggtt 188  Q
    ||||    
T  29615192 ggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 12167533 - 12167420
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  12167533 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 12167435  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  12167434 tagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 19786753 - 19786866
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||  |||||||| |||||||||| ||||||| | |||||||||||||||    
T  19786753 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttatggagtagtaagtcatatgatacatatgtagtagtcgagttgtatg 19786851  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  19786852 tagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 19877626 - 19877513
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  19877626 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 19877528  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  19877527 tagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 19883402 - 19883289
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  19883402 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 19883304  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  19883303 tagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 19286442 - 19286329
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||| | ||||||| | | |||||||||||||    
T  19286442 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatattatacatatgtagtggtcgagttgtatg 19286344  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  19286343 tagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 11289537 - 11289598
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||| ||||||||||| || ||||||| | |||| ||||||||||||||||||||||||||    
T  11289537 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacaggtt 11289598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 10582794 - 10582828
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  10582794 atatgcatttgtcgagttgtatgtagatatacaca 10582828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 18788578 - 18788544
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  18788578 atatgcattagttgagttgtatgtagatatacaca 18788544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 18799558 - 18799524
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  18799558 atatgcattagttgagttgtatgtagatatacaca 18799524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 21566145 - 21566179
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  21566145 atatgcattagttgagttgtatgtagatatacaca 21566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 24562501 - 24562463
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24562501 atatgcatttgttgagttgtatgtagatatacacaggtt 24562463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 9099932 - 9099991
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 183  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  9099932 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 9099991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 29097059 - 29097000
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 183  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  29097059 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 29097000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 24513782 - 24513817
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24513782 acatatgcatt-gtcgagttgtatgtagatatacaca 24513817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 31251593 - 31251557
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||||| || ||||||||||||||||||||||    
T  31251593 acatatgcatttgttgagttgtatgtagatatacaca 31251557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 12726 - 12872
Alignment:
Q  42 atcaagtgaatatataactattgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttg-agttgcggagtagtgagtc 140  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||| | | |  ||||||||| ||||    
T  12726 atcaagtgaatgtataactattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaagtc 12825  T
Q  141 atatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    |||||| | |||||   |||| ||||||||||||||||||||||||||    
T  12826 atatgagatatatg-tgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 23865730 - 23865615
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtca-tatgaaacatatgcattagtcgagttgtat 171  Q
    ||||||| | |||||||||||||||||||||| ||||||| |||||| ||||| ||||||||| ||||| ||||||| |||||||||||| |||||||||    
T  23865730 tgatgtatgtgcataattataaataattgtgtatgttctgaattgtt-gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttgtat 23865632  T
Q  172 gtagatatacacaggtt 188  Q
    |||||||||||||||||    
T  23865631 gtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 19902810 - 19902924
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | |||| ||||||||||||||||| |||||||||||||  |||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  19902810 tgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgtggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 19902908  T
Q  173 tagatatacacaggtt 188  Q
    ||||||||||||||||    
T  19902909 tagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 17053858 - 17053780
Alignment:
Q  109 tctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    |||||||||||||||||| ||||||||  ||||||||| ||||||| | | ||||||||||||||||||||||||||||    
T  17053858 tctggattgtttgagttgtggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  62 ttgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattg 117  Q
    |||||||||| ||||||| | |||||||| ||| ||||||||| ||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 10607178 - 10607120
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcg-agttgtatgtagatatacaca 184  Q
    ||||| ||||||||||| || ||||||||||| |||| |||||||||||||||||||||    
T  10607178 ggagtggtgagtcatataaatacatatgcatttgtcggagttgtatgtagatatacaca 10607120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 23825343 - 23825305
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  23825343 atatgcatttgttgagttgtatgtagatatacacaggtt 23825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 25111061 - 25111027
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  25111061 atatgcattagttgagttgtatgtagatatacaca 25111027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 30766907 - 30766945
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  30766907 atatgcatttgttgagttgtatgtagatatacacaggtt 30766945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 19988110 - 19988178
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatgaaa-catatgcattagtcgagttgtatgtagatatacac 183  Q
    |||||||| ||||||||| || || ||||||||| |||||||||| ||  ||||||||||||||||||||    
T  19988110 ttgtttgaattgcggagttgtaagccatatgaaaacatatgcatt-gttaagttgtatgtagatatacac 19988178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 14057563 - 14057599
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||||| |||||||||||| |||||||||    
T  14057563 acatatgcattagttgagttgtatgtaaatatacaca 14057599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 25624680 - 25624715
Alignment:
Q  151 tatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25624680 tatgcatt-gtcgagttgtatgtagatatacacaggt 25624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 33089036 - 33089001
Alignment:
Q  151 tatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33089036 tatgcatt-gtcgagttgtatgtagatatacacaggt 33089001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 41009392 - 41009448
Alignment:
Q  128 ggagtagtgagtcatatgaaa-catatgcattagtcgagttgtatgtagatatacac 183  Q
    ||||| ||||||||||||||  ||||||||||  | |||||||||||||||||||||    
T  41009392 ggagtggtgagtcatatgaatgcatatgcattgttggagttgtatgtagatatacac 41009448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 174442 - 174557
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||| ||||| | ||||||| |||||||    
T  174442 tgatgtatgtgcataattataaataattgtgtatgttctggattgtttgagttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgtatg 174541  T
Q  173 tagatatacacaggtt 188  Q
    |||| ||||| |||||    
T  174542 tagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 41111110 - 41110997
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  41111110 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 41111012  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  41111011 tagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  62 ttgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    |||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 20941777 - 20941846
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||| ||||||||| || ||||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  20941777 ttgtttgaattgcggagttgtaagtcatatgaaaacatatgcatt-gttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 19664085 - 19664121
Alignment:
Q  148 acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19664085 acatatgcattagttgagttgtatgtagatatacaca 19664121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 20824280 - 20824349
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||| |||||| || |||||||||||| ||||||||||| | ||  |||||||||||||||||||||    
T  20824280 ttgtttgaattgcggtgttgtgagtcatatgaaaacatatgcaat-gttaagttgtatgtagatatacaca 20824349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 21542275 - 21542237
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  21542275 atatgcatttgttgagttgtatgtagatatacacaggtt 21542237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 42095861 - 42095899
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  42095861 atatgcatttgttgagttgtatgtagatatacacaggtt 42095899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 21734429 - 21734464
Alignment:
Q  151 tatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21734429 tatgcatt-gtcgagttgtatgtagatatacacaggt 21734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 21986921 - 21986956
Alignment:
Q  151 tatgcattagtcgagttgtatgtagatatacacaggt 187  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21986921 tatgcatt-gtcgagttgtatgtagatatacacaggt 21986956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 257 - 153
Alignment:
Q  83 gcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatataca 182  Q
    |||||||||||||||||||||| |||||||||||||| ||| || |||||||| |||||||||||| ||||| | |||| ||||||||||||||||||||    
T  257 gcataattataaataattgtgtatgttctggattgtt-gagctgtggagtagtaagtcatatgaaatatatgtaatagttgagttgtatgtagatataca 159  T
Q  183 caggtt 188  Q
    ||||||    
T  158 caggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 23527745 - 23527632
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | ||||||||||||||||||||||  || ||||||| ||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  23527745 tgatgtatgtgcataattataaataattgtgtcagt-ctggattatttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 23527647  T
Q  173 tagatatacacaggt 187  Q
    |||||||||||||||    
T  23527646 tagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  62 ttgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    |||||||||| ||||||| | |||||||||||| |||| |||| ||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 1857461 - 1857499
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  1857461 atatgcatttgttgagttgtatgtagatatacacaggtt 1857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 21675429 - 21675467
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  21675429 atatgcatttgttgagttgtatgtagatatacacaggtt 21675467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 22232556 - 22232625
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatgaaa-catatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| || ||||||||| || |||||||||||| |||||||||| ||  |||||||||||||||||||||    
T  22232556 ttgttcgaattgcggagtcgtaagtcatatgaaaacatatgcatt-gttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 23112694 - 23112728
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  23112694 atatgcattagttgagttgtatgtagatatacaca 23112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 24930789 - 24930848
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 183  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  24930789 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 24930848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 34829273 - 34829216
Alignment:
Q  128 ggagtagtgagtcatatgaaacatatgcattagtcga-gttgtatgtagatatacaca 184  Q
    ||||| ||||||||||| | ||||||||||| || || ||||||||||||||||||||    
T  34829273 ggagtggtgagtcatataatacatatgcatttgttgaagttgtatgtagatatacaca 34829216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 22439683 - 22439715
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatataca 182  Q
    |||||||||||| ||||||||||||||||||||    
T  22439683 atatgcattagttgagttgtatgtagatataca 22439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 111053 - 110939
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | || |||||||||||||||||||  ||||||||||||  |||||| |||||||| |||||||||||| ||||| | |||| ||||||||||    
T  111053 tgatgtatgtgcgtaattataaataattgtgtaggttctggattgtc-gagttgtggagtagtaagtcatatgaaatatatgtaatagttgagttgtatg 110955  T
Q  173 tagatatacacaggtt 188  Q
    ||||||||||||||||    
T  110954 tagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 8046789 - 8046893
Alignment:
Q  83 gcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatataca 182  Q
    |||||||||||||||||||||| || | ||||||  | |||||| |||||||| |||||||||||| ||||| | |||||||||||||||||||||||||    
T  8046789 gcataattataaataattgtgtatgatttggattact-gagttgtggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatataca 8046887  T
Q  183 caggtt 188  Q
    ||||||    
T  8046888 caggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  62 ttgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    |||||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 14556001 - 14556070
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||| ||||||||| || ||||||||| |||||||||||||| |  |||||||||||||||||||||    
T  14556001 ttgtttgaattgcggagttgtaagtcatatgaaaacatatgcatta-ttaagttgtatgtagatatacaca 14556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 1650990 - 1651047
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| ||||||||||| |  |||||||||||||| |||||||| |||||||||||||    
T  1650990 ggagtggtgagtcatataagtacatatgcattagtggagttgtaagtagatatacaca 1651047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 15407154 - 15407097
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| ||||||||||| || |||||||||||  | ||||||||||||||||||||||    
T  15407154 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacaca 15407097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 15325118 - 15325062
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacac 183  Q
    ||||| ||||||||||| || |||||||||||  | |||||||||||||||||||||    
T  15325118 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacac 15325062  T

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Target: scaffold0117 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 9514 - 9628
Alignment:
Q  73 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 172  Q
    ||||||| | |||| ||||||||||||||| | |||||||||||||  |||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  9514 tgatgtatgtgcatgattataaataattgtatatgttctggattgtc-gagttgtggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 9612  T
Q  173 tagatatacacaggtt 188  Q
    ||||||||||||||||    
T  9613 tagatatacacaggtt 9628  T

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Target: scaffold0348 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 1647 - 1716
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||| ||||||||| || ||||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  1647 ttgtttgaattgcggagttgtaagtcatatgaaaacatatgcatt-gttaagttgtatgtagatatacaca 1716  T

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Target: scaffold0348; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  62 ttgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    |||||||||| ||||||| | |||||||| ||| ||||||||| ||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

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Target: scaffold0249 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 7730 - 7798
Alignment:
Q  115 ttgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| || ||||||||| |  |||||||||||||||||||||| ||  |||||||||||||||||||||    
T  7730 ttgttggaattgcggagttgcaagtcatatgaaacatatgcatt-gttaagttgtatgtagatatacaca 7798  T

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Target: scaffold0249; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 7589 - 7667
Alignment:
Q  42 atcaagtgaatatataac-tattgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    ||||||||||||||||   | |||||||||| ||||||| | |||||||||||| |||||| || |||||||| |||||    
T  7589 atcaagtgaatatatagtatgttgaatgaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 28106 - 28050
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacac 183  Q
    ||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  28106 ggagtggtgagtcatatgaatacatatgcattgttggagttgtatgtagatatacac 28050  T

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Target: scaffold0077 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  67 tgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    ||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

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Target: scaffold0077; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  67 tgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 119  Q
    ||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

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Target: scaffold0077; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 4576 - 4608
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatataca 182  Q
    |||||||||||| ||||||||||||||||||||    
T  4576 atatgcattagttgagttgtatgtagatataca 4608  T

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Target: scaffold1853 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1853
Description:

Target: scaffold1853; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 732 - 793
Alignment:
Q  122 agttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||||| || |||||||| | |||||||||||  | ||||||||||||||||||||||    
T  732 agttgcggagttgtaagtcatattatacatatgcattctt-gagttgtatgtagatatacaca 793  T

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Target: scaffold1427 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 1059 - 1025
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  1059 atatgcattagttgagttgtatgtagatatacaca 1025  T

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Target: scaffold1299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1299
Description:

Target: scaffold1299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 125 - 159
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  125 atatgcattagttgagttgtatgtagatatacaca 159  T

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Target: scaffold0476 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 4257 - 4291
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  4257 atatgcattagttgagttgtatgtagatatacaca 4291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 8698 - 8664
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  8698 atatgcatttgtcgagttgtatgtagatatacaca 8664  T

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Target: scaffold0301 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 3431 - 3397
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  3431 atatgcatttgtcgagttgtatgtagatatacaca 3397  T

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Target: scaffold0124 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 36775 - 36809
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  36775 atatgcattagttgagttgtatgtagatatacaca 36809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 41574 - 41608
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  41574 atatgcattagttgagttgtatgtagatatacaca 41608  T

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Target: scaffold0106 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 38620 - 38582
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  38620 atatgcatttgttgagttgtatgtagatatacacaggtt 38582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 46688 - 46748
Alignment:
Q  124 ttgcggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| || ||||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  46688 ttgcggagttgtaagtcatatgaacatatatgcatt-gtcaagttgtatgtagatatacaca 46748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 50961 - 51021
Alignment:
Q  124 ttgcggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| || ||||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  50961 ttgcggagttgtaagtcatatgaacatatatgcatt-gtcaagttgtatgtagatatacaca 51021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 17383 - 17417
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  17383 atatgcatttgtcgagttgtatgtagatatacaca 17417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 30103 - 30141
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  30103 atatgcatttgttgagttgtatgtagatatacacaggtt 30141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 35504 - 35542
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  35504 atatgcatttgttgagttgtatgtagatatacacaggtt 35542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 46937 - 46975
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  46937 atatgcatttgttgagttgtatgtagatatacacaggtt 46975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 15414 - 15448
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacaca 184  Q
    |||||||||||| ||||||||||||||||||||||    
T  15414 atatgcattagttgagttgtatgtagatatacaca 15448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 174519 - 174557
Alignment:
Q  150 atatgcattagtcgagttgtatgtagatatacacaggtt 188  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  174519 atatgcatttgttgagttgtatgtagatatacacaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 153275 - 153332
Alignment:
Q  128 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 184  Q
    ||||| ||||||||||| || |||||||||||  | ||||||||||||||||||||||    
T  153275 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacaca 153332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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