View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_9 (Length: 562)
Name: NF6978_low_9
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 12 - 555
Target Start/End: Original strand, 10078531 - 10079074
Alignment:
| Q |
12 |
tggacatcataatcaggcgcaacagtctgaagaacaattacagcagcaacagcagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaa |
111 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078531 |
tggacatcataatcaggcgcaacagtctgaagatcaattacagcagcaacaacagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaa |
10078630 |
T |
|
| Q |
112 |
gctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078631 |
gctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggac |
10078730 |
T |
|
| Q |
212 |
ttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078731 |
ttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttc |
10078830 |
T |
|
| Q |
312 |
atgcagtacagtgccacaggcacaaccaaactcgtccccttttcattcaccaacaccgtcctcatctaacaacaacccacaaacttctcaccctggctta |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10078831 |
atgcagtacagtgccacaggcacaaccaaactcgtccccttttcattcaccaacaccgtcctcatctaacaacaacccgcaaacttctcaccctggctta |
10078930 |
T |
|
| Q |
412 |
acatctgcaaatcacatgggtacagtaaactcaccagctaatatttccatgcaacaacagcaggcatctgtttctggtgaagccgaccctagtaatgatg |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10078931 |
acatctgcaaatcacatgggtacagtaaactcaccagctaatatttccatgcaacaacagcaggcatctgtttctggtgaagctgaccctagtaatgatg |
10079030 |
T |
|
| Q |
512 |
ctcagaactcggtccagaaaataattcacgacatgatgatgtcc |
555 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10079031 |
ctcagaactcggtccagaaaataattcacgacatgatgatgtcc |
10079074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 82 - 395
Target Start/End: Complemental strand, 40776318 - 40776005
Alignment:
| Q |
82 |
aactcaaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctg |
181 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||| | |||||| | |||| | ||||||| |||| |||||||||| |||||| || || || | |
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| T |
40776318 |
aactcaaatggcgatcaaaacccagtgcaagctgcttccatgcaaattgcttccagcaatggtatggttagtgtaaatagttctgtcaactcggcgtccg |
40776219 |
T |
|
| Q |
182 |
catcgaccaccacaagcaccattgttggacttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggagg |
281 |
Q |
| |
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|||| || ||||||||||| |||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40776218 |
catcaacaaccacaagcactattgttggacttctccaccaaaactctgtgaattctagaca---aaattcaatgaacaatgcaagcagtccatatggagg |
40776122 |
T |
|
| Q |
282 |
tagttcagctcatattccatccccaggttcatgcagtacagtgccacaggcacaaccaaactcgtccccttttcattcacca---acaccgtcctcatct |
378 |
Q |
| |
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|| ||| | ||| ||||||||||| ||||| | |||||| ||||||||||| || |||||||| ||||||||||| |||||| ||||| ||||||||| |
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| T |
40776121 |
taattctgttcagattccatcccctggttcctccagtactgtgccacaggcccagccaaactcatccccttttcagtcaccacctacaccatcctcatct |
40776022 |
T |
|
| Q |
379 |
aacaacaacccacaaac |
395 |
Q |
| |
|
|| ||| ||||||||| |
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|
| T |
40776021 |
aataaccccccacaaac |
40776005 |
T |
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Back To:
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