View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6979_low_1 (Length: 505)

Name: NF6979_low_1
Description: NF6979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6979_low_1
NF6979_low_1
[»] chr8 (53 HSPs)
chr8 (57-390)||(10279365-10279697)
chr8 (17-135)||(42797242-42797362)
chr8 (17-133)||(13756548-13756666)
chr8 (8-135)||(10901390-10901519)
chr8 (17-135)||(23141752-23141872)
chr8 (50-135)||(21588824-21588911)
chr8 (49-128)||(23683135-23683214)
chr8 (49-124)||(40885776-40885851)
chr8 (55-133)||(17888052-17888130)
chr8 (8-135)||(30254531-30254663)
chr8 (107-177)||(35225943-35226013)
chr8 (49-179)||(12157181-12157315)
chr8 (49-146)||(41527027-41527124)
chr8 (6-138)||(19263304-19263437)
chr8 (27-135)||(23686622-23686732)
chr8 (4-135)||(13758902-13759030)
chr8 (55-149)||(15342301-15342395)
chr8 (55-149)||(15431366-15431460)
chr8 (55-149)||(15522670-15522764)
chr8 (49-135)||(45247789-45247875)
chr8 (49-102)||(357546-357599)
chr8 (53-133)||(26622857-26622938)
chr8 (49-133)||(367235-367319)
chr8 (31-135)||(16220246-16220352)
chr8 (107-179)||(19262656-19262732)
chr8 (23-135)||(38290544-38290658)
chr8 (281-343)||(759871-759933)
chr8 (55-133)||(8358803-8358881)
chr8 (49-90)||(13758078-13758119)
chr8 (279-316)||(16307356-16307393)
chr8 (279-316)||(37250749-37250786)
chr8 (62-133)||(16313248-16313317)
chr8 (62-133)||(34800834-34800903)
chr8 (30-131)||(42797103-42797206)
chr8 (276-315)||(16311105-16311144)
chr8 (64-131)||(17871244-17871311)
chr8 (69-132)||(18953362-18953425)
chr8 (55-90)||(21586497-21586532)
chr8 (280-311)||(32917368-32917399)
chr8 (276-315)||(34802979-34803018)
chr8 (23-79)||(45528252-45528310)
chr8 (279-316)||(10901023-10901060)
chr8 (279-316)||(16249620-16249657)
chr8 (279-316)||(16312830-16312867)
chr8 (279-316)||(34801284-34801321)
chr8 (50-79)||(41787087-41787116)
chr8 (13-85)||(45245034-45245107)
chr8 (90-130)||(758111-758151)
chr8 (30-86)||(4072889-4072945)
chr8 (30-131)||(23141613-23141716)
chr8 (262-310)||(32918215-32918263)
chr8 (62-133)||(37251164-37251233)
chr8 (34-87)||(45527334-45527389)
[»] scaffold0159 (3 HSPs)
scaffold0159 (8-135)||(33194-33321)
scaffold0159 (49-133)||(31576-31660)
scaffold0159 (244-312)||(32783-32851)
[»] chr2 (28 HSPs)
chr2 (8-135)||(5788821-5788948)
chr2 (8-135)||(3395400-3395529)
chr2 (8-135)||(36720076-36720205)
chr2 (36-134)||(29977336-29977436)
chr2 (56-134)||(29651782-29651860)
chr2 (13-131)||(34425545-34425664)
chr2 (63-133)||(36729280-36729350)
chr2 (17-96)||(41754117-41754198)
chr2 (13-125)||(24967965-24968078)
chr2 (52-135)||(19040707-19040789)
chr2 (52-135)||(39839082-39839164)
chr2 (49-132)||(36727624-36727707)
chr2 (55-133)||(20106660-20106738)
chr2 (30-133)||(38796797-38796902)
chr2 (108-148)||(17680963-17681003)
chr2 (53-121)||(19994423-19994490)
chr2 (30-131)||(41753978-41754081)
chr2 (49-87)||(31967092-31967130)
chr2 (30-80)||(12454015-12454067)
chr2 (49-102)||(14903541-14903594)
chr2 (49-133)||(5787203-5787287)
chr2 (244-312)||(5788410-5788478)
chr2 (107-159)||(6910320-6910372)
chr2 (4-133)||(31963646-31963777)
chr2 (49-133)||(39403820-39403904)
chr2 (284-324)||(45055177-45055217)
chr2 (56-135)||(45659850-45659927)
chr2 (284-324)||(45660634-45660674)
[»] chr5 (20 HSPs)
chr5 (6-135)||(38015878-38016009)
chr5 (49-144)||(9024946-9025041)
chr5 (13-131)||(27594522-27594641)
chr5 (49-135)||(20966121-20966207)
chr5 (6-135)||(33013852-33013979)
chr5 (55-130)||(9012711-9012786)
chr5 (49-148)||(19910596-19910695)
chr5 (279-316)||(4062611-4062648)
chr5 (279-316)||(7332521-7332558)
chr5 (27-149)||(11769735-11769859)
chr5 (62-133)||(4062162-4062231)
chr5 (62-133)||(8128432-8128501)
chr5 (276-315)||(4063709-4063748)
chr5 (13-125)||(10175893-10176006)
chr5 (13-83)||(19320306-19320377)
chr5 (261-316)||(23570923-23570978)
chr5 (276-315)||(29863730-29863769)
chr5 (18-133)||(29865827-29865942)
chr5 (279-316)||(29865455-29865492)
chr5 (62-133)||(7332935-7333004)
[»] chr3 (34 HSPs)
chr3 (17-135)||(50331915-50332035)
chr3 (26-149)||(10020102-10020227)
chr3 (13-135)||(40056526-40056649)
chr3 (49-135)||(14044290-14044376)
chr3 (49-128)||(30171174-30171253)
chr3 (6-162)||(32971108-32971266)
chr3 (55-133)||(20779566-20779644)
chr3 (49-135)||(20934988-20935073)
chr3 (13-156)||(40416275-40416420)
chr3 (37-134)||(25225304-25225403)
chr3 (49-128)||(20788453-20788532)
chr3 (49-135)||(17764131-17764216)
chr3 (49-135)||(19065451-19065536)
chr3 (49-135)||(32976462-32976547)
chr3 (18-131)||(39183069-39183183)
chr3 (30-160)||(10021092-10021224)
chr3 (37-135)||(52753017-52753117)
chr3 (107-159)||(51083-51135)
chr3 (52-135)||(42400377-42400459)
chr3 (38-133)||(32970436-32970533)
chr3 (50-129)||(36096126-36096207)
chr3 (6-160)||(10021811-10021967)
chr3 (49-146)||(50241472-50241569)
chr3 (62-133)||(19817404-19817473)
chr3 (31-140)||(34849788-34849899)
chr3 (55-90)||(12744020-12744055)
chr3 (57-132)||(14045395-14045470)
chr3 (261-311)||(32264759-32264809)
chr3 (8-86)||(37835402-37835479)
chr3 (6-80)||(50413-50489)
chr3 (279-316)||(19816985-19817022)
chr3 (227-316)||(40057311-40057400)
chr3 (67-135)||(431978-432046)
chr3 (284-324)||(9264817-9264857)
[»] scaffold0380 (1 HSPs)
scaffold0380 (4-127)||(14522-14647)
[»] chr1 (30 HSPs)
chr1 (8-135)||(43387047-43387176)
chr1 (23-138)||(47783153-47783270)
chr1 (49-135)||(20306724-20306809)
chr1 (51-128)||(21469816-21469893)
chr1 (50-135)||(22636310-22636395)
chr1 (49-128)||(19065744-19065823)
chr1 (49-128)||(19113634-19113713)
chr1 (52-135)||(40946529-40946611)
chr1 (49-137)||(43385111-43385199)
chr1 (52-135)||(1992432-1992514)
chr1 (13-131)||(7844572-7844691)
chr1 (49-128)||(22538395-22538474)
chr1 (52-135)||(30001736-30001818)
chr1 (31-135)||(49879122-49879228)
chr1 (49-135)||(22541909-22541995)
chr1 (227-316)||(7843824-7843913)
chr1 (54-135)||(15524726-15524807)
chr1 (4-174)||(49882679-49882851)
chr1 (65-133)||(3981637-3981705)
chr1 (107-143)||(3982724-3982760)
chr1 (62-133)||(17006492-17006561)
chr1 (62-133)||(34159530-34159599)
chr1 (276-315)||(17001519-17001558)
chr1 (261-316)||(19103057-19103112)
chr1 (276-315)||(34161702-34161741)
chr1 (49-87)||(45919473-45919511)
chr1 (49-87)||(49880577-49880615)
chr1 (279-316)||(17006075-17006112)
chr1 (27-97)||(19098995-19099067)
chr1 (13-117)||(26531519-26531623)
[»] chr6 (30 HSPs)
chr6 (21-135)||(1599692-1599808)
chr6 (49-131)||(31737206-31737288)
chr6 (49-128)||(33350293-33350372)
chr6 (29-148)||(2976684-2976805)
chr6 (55-163)||(15878817-15878925)
chr6 (49-128)||(21984182-21984261)
chr6 (4-135)||(11554334-11554467)
chr6 (31-149)||(9449581-9449701)
chr6 (52-135)||(7428479-7428561)
chr6 (13-137)||(24175016-24175141)
chr6 (4-135)||(4852811-4852944)
chr6 (108-156)||(10191104-10191152)
chr6 (49-133)||(21988834-21988918)
chr6 (16-81)||(29214239-29214306)
chr6 (52-135)||(16279074-16279156)
chr6 (8-88)||(24397965-24398047)
chr6 (71-148)||(2953185-2953262)
chr6 (49-126)||(19660319-19660396)
chr6 (279-316)||(20872935-20872972)
chr6 (62-133)||(23410088-23410157)
chr6 (87-135)||(26894913-26894961)
chr6 (16-52)||(26894975-26895011)
chr6 (276-315)||(9449955-9449994)
chr6 (261-316)||(21985960-21986015)
chr6 (49-86)||(4851983-4852020)
chr6 (49-86)||(11555259-11555296)
chr6 (279-316)||(23409670-23409707)
chr6 (30-131)||(1599848-1599951)
chr6 (62-133)||(20872487-20872556)
chr6 (276-316)||(21055743-21055783)
[»] chr4 (36 HSPs)
chr4 (8-135)||(13228702-13228830)
chr4 (4-135)||(281930-282059)
chr4 (49-146)||(6554533-6554630)
chr4 (13-131)||(17675240-17675359)
chr4 (54-135)||(49953018-49953101)
chr4 (23-135)||(11559519-11559631)
chr4 (58-133)||(36697769-36697844)
chr4 (55-157)||(13918224-13918326)
chr4 (49-146)||(314315-314412)
chr4 (52-133)||(35695054-35695134)
chr4 (55-135)||(6560985-6561065)
chr4 (50-135)||(39974854-39974941)
chr4 (49-132)||(42729464-42729545)
chr4 (63-131)||(56340282-56340350)
chr4 (55-133)||(316508-316586)
chr4 (65-135)||(24183432-24183501)
chr4 (65-135)||(50158198-50158268)
chr4 (25-99)||(14266234-14266310)
chr4 (279-324)||(35695693-35695738)
chr4 (279-316)||(55050497-55050534)
chr4 (62-133)||(55050048-55050117)
chr4 (30-80)||(9694408-9694459)
chr4 (55-90)||(39977246-39977281)
chr4 (6-135)||(42757527-42757659)
chr4 (276-315)||(55051600-55051639)
chr4 (49-87)||(313117-313155)
chr4 (49-87)||(6553334-6553372)
chr4 (81-135)||(28475656-28475710)
chr4 (107-168)||(4236390-4236451)
chr4 (107-168)||(4279721-4279782)
chr4 (6-80)||(22681165-22681241)
chr4 (279-316)||(26289579-26289616)
chr4 (62-130)||(26289997-26290063)
chr4 (70-135)||(48683183-48683248)
chr4 (55-135)||(11560220-11560299)
chr4 (6-135)||(42756767-42756898)
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-130)||(50164-50290)
[»] scaffold0024 (2 HSPs)
scaffold0024 (13-122)||(47112-47223)
scaffold0024 (59-122)||(41449-41512)
[»] scaffold0216 (1 HSPs)
scaffold0216 (56-133)||(29168-29245)
[»] chr7 (13 HSPs)
chr7 (49-148)||(43989679-43989777)
chr7 (16-133)||(6677088-6677207)
chr7 (107-177)||(36837375-36837445)
chr7 (13-133)||(29912594-29912714)
chr7 (36-135)||(2452123-2452221)
chr7 (14-135)||(38788897-38789018)
chr7 (60-125)||(4120006-4120071)
chr7 (32-92)||(2927976-2928038)
chr7 (56-133)||(4110362-4110437)
chr7 (63-129)||(24708451-24708517)
chr7 (52-90)||(26374611-26374649)
chr7 (279-316)||(29913043-29913080)
chr7 (55-100)||(45610345-45610390)
[»] scaffold1345 (1 HSPs)
scaffold1345 (50-148)||(1845-1942)
[»] scaffold0051 (2 HSPs)
scaffold0051 (24-135)||(12574-12687)
scaffold0051 (109-176)||(18270-18337)
[»] scaffold0284 (4 HSPs)
scaffold0284 (55-132)||(6424-6501)
scaffold0284 (4-133)||(7537-7668)
scaffold0284 (49-144)||(826-921)
scaffold0284 (49-87)||(2091-2129)
[»] scaffold0114 (3 HSPs)
scaffold0114 (49-146)||(37032-37129)
scaffold0114 (49-158)||(1350-1457)
scaffold0114 (49-87)||(35454-35492)
[»] scaffold1743 (1 HSPs)
scaffold1743 (6-138)||(188-321)
[»] scaffold0211 (2 HSPs)
scaffold0211 (49-146)||(18450-18547)
scaffold0211 (49-87)||(19707-19745)
[»] scaffold0074 (1 HSPs)
scaffold0074 (8-89)||(30887-30970)
[»] scaffold1750 (1 HSPs)
scaffold1750 (53-135)||(279-360)
[»] scaffold0169 (2 HSPs)
scaffold0169 (50-133)||(2290-2376)
scaffold0169 (265-323)||(3686-3744)
[»] scaffold0012 (1 HSPs)
scaffold0012 (62-133)||(31023-31092)
[»] scaffold0191 (1 HSPs)
scaffold0191 (65-135)||(5164-5233)
[»] scaffold0119 (1 HSPs)
scaffold0119 (282-316)||(41046-41080)
[»] scaffold0061 (1 HSPs)
scaffold0061 (23-74)||(45618-45671)
[»] scaffold0017 (1 HSPs)
scaffold0017 (23-74)||(153116-153169)
[»] scaffold1819 (1 HSPs)
scaffold1819 (36-80)||(179-223)
[»] scaffold1104 (1 HSPs)
scaffold1104 (36-80)||(1701-1745)
[»] scaffold0107 (1 HSPs)
scaffold0107 (108-144)||(43666-43702)
[»] scaffold0021 (1 HSPs)
scaffold0021 (58-138)||(128292-128372)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 53)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 57 - 390
Target Start/End: Complemental strand, 10279697 - 10279365
Alignment:
Q  57 catctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 156  Q
    ||||||| |||||||||||| || ||||||| || |||  |||||   |  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10279697 catctcatttatatgttgttgaaaatctactctttcatgtaatgtagaaggttaactcacacttgacacattaacatctattaatcaagtgtgcgactat 10279598  T
Q  157 ccacgtctgtaagtatgtgacgataaggaatttgaacatgagagagacgataaggnnnnnnnnnntgtagtgtgtgttttgtctattagagtgtagggaa 256  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  10279597 ccacgtctgtaattatgtgacgataaggaatttaaacatgagagagacgataaggaaaaaaaaa-tgtagtgtgtgttttgtctattagagtgtagggaa 10279499  T
Q  257 taaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaattgnnnnnnntgata 356  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  10279498 taaagtgagttgaagatatttatatgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaattgaaaaaaatgata 10279399  T
Q  357 catcattgtaaaagatcaaaattgtagtaatttc 390  Q
    ||||||||||||||| |||||||| |||||||||    
T  10279398 catcattgtaaaagaccaaaattgaagtaatttc 10279365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 42797242 - 42797362
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  42797242 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaactc 42797341  T
Q  115 acacttgacacattaacatct 135  Q
    |||||||||||||||||||||    
T  42797342 acacttgacacattaacatct 42797362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 13756666 - 13756548
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  13756666 tcacaacttcacccaaaatcttaagacattagatacatgagtcatttcacttaaatgtttctcaacatctactattgcattcaatgtgttattttaactc 13756567  T
Q  115 acacttgacacattaacat 133  Q
    |||||||||||||||||||    
T  13756566 acacttgacacattaacat 13756548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 10901390 - 10901519
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| |||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  10901390 agattgacatcacaacttcacccaaaatcttaacacattagatatacgagtcatctcacttgtatgttactcaacatctactattgcattcaatgtgtta 10901489  T
Q  106 ttttaactcacacttgacacattaacatct 135  Q
    |||||||||||| |||| ||||||||||||    
T  10901490 ttttaactcacatttgatacattaacatct 10901519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 23141752 - 23141872
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23141752 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 23141851  T
Q  115 acacttgacacattaacatct 135  Q
    | ||||||||| |||||||||    
T  23141852 atacttgacacgttaacatct 23141872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 21588824 - 21588911
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactat-tg-cattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| ||||||| ||||| ||||| ||| || ||||||||||||||||||||| ||| |||||||||||| |||||    
T  21588824 tatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttattttaacccacccttgacacattaccatct 21588911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 23683214 - 23683135
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  23683214 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 23683135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 40885851 - 40885776
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 124  Q
    |||||||| || |||||||||||||||||||||| || |||||||| |||||||  ||||||| ||||||||||||    
T  40885851 atatgagttatatcacttatatgttgttcaacatttattattgcatccaatgtgaaattttaaatcacacttgaca 40885776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 17888130 - 17888052
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||||| || ||| || ||| | || |||||||||| |||||||||||||||    
T  17888130 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 17888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 30254663 - 30254531
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcat--ctcactt-atatgttgttcaacatctactattgcattcaatgtg 102  Q
    |||||||||||||| ||||||||||| ||||  ||||||||  ||||||||| |  ||||||| |||||||||||||||| |||  ||||||  | |||     
T  30254663 agatggacatcacatcttcacccaaagtcttttgacattaggtatatgagtcgtgtctcactttatatgttgttcaacatatacgtttgcatctattgtc 30254564  T
Q  103 ttattttaactcacacttgacacattaacatct 135  Q
      ||||||||||||| |||||||||||||||||    
T  30254563 gaattttaactcacatttgacacattaacatct 30254531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 35225943 - 35226013
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgac 177  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||| |||| || ||||| ||||||||    
T  35225943 tttaactcatacttgacacattaacatcttttattcaagtgtgtgactctccaagtttgtaattatgtgac 35226013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 12157315 - 12157181
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    ||||||||||||| ||||||||| ||||||| ||| ||| || ||| | || |   | ||||||||||| |||||||||||| |||| ||||||||||||    
T  12157315 atatgagtcatcttacttatatggtgttcaaaatccacttttccatcctatataaaactttaactcacaattgacacattaatatcttttaatcaagtgt 12157216  T
Q  149 gtgact----atccacgtctgtaagtatgtgacga 179  Q
     |||||    ||||| |||||||| ||||||||||    
T  12157215 atgactctccatccatgtctgtaattatgtgacga 12157181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 41527027 - 41527124
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagt 146  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   |||||||||||||||||||||||||| |||| ||| ||||||    
T  41527027 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagt 41527124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 19263304 - 19263437
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| || || || ||| |||||||||||||  ||||||||||| |||||||| |||||||||||   |||| |||||| ||||| |     
T  19263304 tgagattgacaccacatctccatcctaaaccttaagacattaggtatatgagtcatatcacttatttgttgttcaacggttactcttgcatccaatgcga 19263403  T
Q  104 tattttaactcacacttgacacattaacatctatt 138  Q
     |  |||||||||||||||||||||||||| ||||    
T  19263404 ga-cttaactcacacttgacacattaacatttatt 19263437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 23686732 - 23686622
Alignment:
Q  27 acccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 124  Q
    |||||||| |||||| ||| ||||||   |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||||||    
T  23686732 acccaaaaccttaagtcatcagatatatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgaca 23686633  T
Q  125 cattaacatct 135  Q
     ||||||||||    
T  23686632 tattaacatct 23686622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 13759030 - 13758902
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| ||||  || |||||||| ||||||||||||| |||  | ||||||||||| |||||||||| |||| ||||| |||||| |||       
T  13759030 aatgagattgacaccacattttgacccaaaaccttaagacattaggtatacgggtcatctcactaatatgttgtttaacaactactcttgcatccaa--- 13758934  T
Q  102 gttattttaactcacacttgacacattaacatct 135  Q
      ||  ||||||||||||||| ||||||||||||    
T  13758933 --taggttaactcacacttgatacattaacatct 13758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 15342301 - 15342395
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgtg 149  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| |||| |||||||||||||    
T  15342301 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 15431366 - 15431460
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgtg 149  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| |||| |||||||||||||    
T  15431366 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15431460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 15522670 - 15522764
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgtg 149  Q
    ||||||||||||||||||||||||| || || | || ||| |||| | | | |||||||||||||| | ||||||| |||| |||||||||||||    
T  15522670 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtg 15522764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 45247875 - 45247789
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||| ||   | |||||||||||||||||| ||||| ||||    
T  45247875 atatgagtcatctcatttatattttgttcaacacatacttttgcattcaacgtagaactttaactcacacttgacatattaaaatct 45247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 357599 - 357546
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtg 102  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  357599 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtg 357546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 26622857 - 26622938
Alignment:
Q  53 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta-ttttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||||||| ||||||||  ||| |||||   | || ||||||||||||||||||| |||||    
T  26622857 gagtcatctcacttatatgttgttcaacacctactattttatttaatgttagacttataactcacacttgacacatcaacat 26622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 367319 - 367235
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | |||||||||||||||||| ||||||||    
T  367319 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacat 367235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 16220246 - 16220352
Alignment:
Q  31 aaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    |||| |||||||||||||||  || |||| || ||||||||| |||||||| || ||||||| |||||||| | | ||||||||| |||| ||  |||||    
T  16220246 aaaagcttaagacattagatgtattagtcttcccacttatattttgttcaatatatactatttcattcaatttataattttaacttacacatggtacatt 16220345  T
Q  129 aacatct 135  Q
    |||||||    
T  16220346 aacatct 16220352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 19262656 - 19262732
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgact----atccacgtctgtaagtatgtgacga 179  Q
    ||||| |||||||||||| |||||||||| ||||||||||||| ||||    ||||| |||||||| ||||||||||    
T  19262656 tttaagtcacacttgacagattaacatcttttaatcaagtgtgcgactctccatccatgtctgtaattatgtgacga 19262732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 38290658 - 38290544
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacactt 120  Q
    ||||||| ||| ||||||| ||||||  |||| ||||| | |||||||||||| || ||||| | || ||||||  |||||   ||| ||||||||||||    
T  38290658 cttcaccaaaagtcttaaggcattaggtatatcagtcaacccacttatatgtttttaaacattttctcttgcatgtaatgtaaaattataactcacactt 38290559  T
Q  121 gacacattaacatct 135  Q
    |||||||||||||||    
T  38290558 gacacattaacatct 38290544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 759933 - 759871
Alignment:
Q  281 tgagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaatt 343  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||   |||||||||| |||||    
T  759933 tgagtttgttgaaggagttggggatttttggataattaatttaccaaaaaattagacttaatt 759871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 8358803 - 8358881
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||||| || |||  | ||| | |  |||||||||| |||||||||||||||    
T  8358803 gtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtataacgttaactcacatttgacacattaacat 8358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 13758119 - 13758078
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactatt 90  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  13758119 atatgagtcatctcacgtatatgttattcaacatctactatt 13758078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 16307356 - 16307393
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16307356 tatgagtttgttaaaggagttggagatttttgggtaat 16307393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 37250749 - 37250786
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||||||||||||||    
T  37250749 tatgagtttgttaaaggagttggagatttttgggtaat 37250786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 16313248 - 16313317
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  16313248 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 16313317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 34800903 - 34800834
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  34800903 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 34800834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 42797103 - 42797206
Alignment:
Q  30 caaaatcttaagacattaga--tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| ||  ||| ||||||||||||||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  42797103 caaaaccttaagacattggaaatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataactttaaatgacacgtgacacat 42797202  T
Q  128 taac 131  Q
    ||||    
T  42797203 taac 42797206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 16311105 - 16311144
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  16311105 ttatatgagtttgttgaaggatttgaagatttttgggtaa 16311144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 17871311 - 17871244
Alignment:
Q  64 cttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 131  Q
    ||||||||||| |||| || |||| || ||||||||||   | |||||||||||||||||||||||||    
T  17871311 cttatatgttgctcaatatttactcttacattcaatgtaaaactttaactcacacttgacacattaac 17871244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 18953362 - 18953425
Alignment:
Q  69 atgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    ||||| ||||||||||||| |||||| ||||||   ||||||| ||||| ||||||||||||||    
T  18953362 atgtttttcaacatctactcttgcatccaatgtcaaattttaattcacagttgacacattaaca 18953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 21586497 - 21586532
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21586497 gtcatctcacttatatgttattcaacatctactatt 21586532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 311
Target Start/End: Complemental strand, 32917399 - 32917368
Alignment:
Q  280 atgagtttgttgaaggagttggagatttttgg 311  Q
    ||||||||||||||||||||||||||||||||    
T  32917399 atgagtttgttgaaggagttggagatttttgg 32917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 34803018 - 34802979
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34803018 ttatatgagtttgttgaaggatttgaagatttttgggtaa 34802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 45528310 - 45528252
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| |||||||||| ||||    
T  45528310 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgctcaa 45528252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 10901023 - 10901060
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  10901023 tatgagtttgttgaaggagttggaaattattgggtaat 10901060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 16249620 - 16249657
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  16249620 tatgagtttgttaaaggagtttgagatttttgggtaat 16249657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 16312830 - 16312867
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  16312830 tatgagtttgttaaaggagtttgagatttttgggtaat 16312867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 34801321 - 34801284
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34801321 tatgagtttgttaaaggagtttgagatttttgggtaat 34801284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 41787087 - 41787116
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaa 79  Q
    ||||||||||||||||||||||||||||||    
T  41787087 tatgagtcatctcacttatatgttgttcaa 41787116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 45245107 - 45245034
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatcta 85  Q
    |||| |||| |||||||  ||| |||||| |||||  |||||||| || |||||||||||||||||||||||||    
T  45245107 gacaccacatcttcaccttaaaccttaagtcattaatatatgagttatatcacttatatgttgttcaacatcta 45245034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 758151 - 758111
Alignment:
Q  90 tgcattcaatgtgttattttaactcacacttgacacattaa 130  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  758151 tgcattcaatgtggaattttaacttacacttgacacattaa 758111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 4072945 - 4072889
Alignment:
Q  30 caaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctac 86  Q
    ||||| ||||||||||||| ||||  || ||| |||||||||||| |||||||||||    
T  4072945 caaaaccttaagacattagttatggatcttcttacttatatgttgctcaacatctac 4072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 23141613 - 23141716
Alignment:
Q  30 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| |||||   ||||||||||||| ||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  23141613 caaaaccttaagacattggatatattagtcatctcacttgtatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 23141712  T
Q  128 taac 131  Q
    ||||    
T  23141713 taac 23141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 32918263 - 32918215
Alignment:
Q  262 tgagttgatgatatttatatgagtttgttgaaggagttggagatttttg 310  Q
    ||||||| ||||| ||||||| |||||||||||||| ||||||| ||||    
T  32918263 tgagttgctgataattatatgggtttgttgaaggaggtggagatgtttg 32918215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 37251164 - 37251233
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  37251164 cacttatatgttactcaatatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 37251233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 45527389 - 45527334
Alignment:
Q  34 atcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||||||| |||  || |||||| |||||||||||| ||||||||||||    
T  45527389 atcttaagacattaggtatacgactcatctaacttatatgttggtcaacatctact 45527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 33194 - 33321
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33194 agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 33293  T
Q  108 ttaactcacacttgacacattaacatct 135  Q
    |||||||||| |||||||||||||||||    
T  33294 ttaactcacatttgacacattaacatct 33321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 31576 - 31660
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||| |||||||||  |||||||| |||||||||||||||| |||  | |||  || ||||||||| || ||||| ||||||||    
T  31576 atatgggtcatctcatgtatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacat 31660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 32783 - 32851
Alignment:
Q  244 agagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttggg 312  Q
    ||||| ||||||||||| ||| ||| || || || ||||| |||||||||||||||||| ||| |||||    
T  32783 agagtatagggaataaaatgatttgctggtaattttatgaatttgttgaaggagttggaaattattggg 32851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 5788821 - 5788948
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5788821 agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatt 5788920  T
Q  108 ttaactcacacttgacacattaacatct 135  Q
    |||||||||| |||||||||||||||||    
T  5788921 ttaactcacatttgacacattaacatct 5788948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 3395400 - 3395529
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  3395400 agattgacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgtta 3395499  T
Q  106 ttttaactcacacttgacacattaacatct 135  Q
    ||||||||||||| ||||||||||||||||    
T  3395500 ttttaactcacacctgacacattaacatct 3395529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 36720205 - 36720076
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||| ||||||||||| |||| |||||||||  |||||  ||||||||||||||||||| ||||||| || |||||||  || |||   |    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  106 ttttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||||||||||||||    
T  36720105 ttttaactcacacttgacacattaacatct 36720076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 29977336 - 29977436
Alignment:
Q  36 cttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||||  ||||||||||| |||||||||||||  |||||||| ||| ||||||||||||||  | ||||||| |||||||||||||||||||    
T  29977336 cttaagacattaggtatatgagtcatatcacttatatgtttatcaacatccactcttgcattcaatgtggaactttaacttacacttgacacattaacat 29977435  T
Q  134 c 134  Q
    |    
T  29977436 c 29977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 29651860 - 29651782
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 134  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||||  | ||||||||||| ||||||||||||||||    
T  29651860 tcatatcacttagatgttgttcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacatc 29651782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 34425545 - 34425664
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||| ||| || ||| |||||  |||||||| || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  34425545 gacaccacatcttcaccctaaacctcaagtcattaatatatgagttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 34425644  T
Q  112 ctcacacttgacacattaac 131  Q
     ||||||||||||| |||||    
T  34425645 atcacacttgacacgttaac 34425664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 36729280 - 36729350
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| |||||| |||||||  ||||| |||||||||||||| ||||||||    
T  36729280 acttatatgttgttcaacatctactcttgcatacaatgtgaaatttttactcacacttgacaaattaacat 36729350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 41754117 - 41754198
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattc 96  Q
    |||||||||||||||||||||||| |||||||||  ||||||||| |||  ||||||||  |||||||||||||||||||||    
T  41754117 tcacaacttcacccaaaatcttaatacattagatacatgagtcatatcatatatatgtttctcaacatctactattgcattc 41754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 24968078 - 24967965
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||| ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  24968078 gacaccacatcttcaccctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 24967979  T
Q  112 ctcacacttgacac 125  Q
     |||||||||||||    
T  24967978 atcacacttgacac 24967965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 19040789 - 19040707
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  19040789 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatct 19040707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 39839082 - 39839164
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  39839082 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatct 39839164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 36727624 - 36727707
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    |||| ||||||||||| ||||||||  | |||||||||| ||||||  ||||||  ||||||| ||||| ||||||||||||||    
T  36727624 atattagtcatctcacatatatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaaca 36727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 20106660 - 20106738
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||||||| || ||||| ||||||| || ||| |||||| | |  |||||||||| |||||||||||||||    
T  20106660 gtcatctcacttatattttattcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 20106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 38796902 - 38796797
Alignment:
Q  30 caaaatcttaagacattaga--tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    |||||||||||| |||||||  ||| |||||| |||||||||||||  ||||||| |||| || ||| |||| ||  ||||||| ||||| ||||||||     
T  38796902 caaaatcttaaggcattagacatattagtcatttcacttatatgtttctcaacatatactctttcatccaatatgaaattttaagtcacagttgacacac 38796803  T
Q  128 taacat 133  Q
    ||||||    
T  38796802 taacat 38796797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 17680963 - 17681003
Alignment:
Q  108 ttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  17680963 ttaactcacacttgatacattaacatcttttaatcaagtgt 17681003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 19994423 - 19994490
Alignment:
Q  53 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttg 121  Q
    |||||||||||||||||| ||| ||| |||||||| |||||| |||| ||  |||||||||||||||||    
T  19994423 gagtcatctcacttatatattgctca-catctactcttgcatacaatttgaaattttaactcacacttg 19994490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 41753978 - 41754081
Alignment:
Q  30 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| |||||   ||||||||||||||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  41753978 caaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 41754077  T
Q  128 taac 131  Q
    ||||    
T  41754078 taac 41754081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 31967092 - 31967130
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31967092 atatgagtcatataacttatatgttgttcaacatctact 31967130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 12454067 - 12454015
Alignment:
Q  30 caaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaac 80  Q
    ||||| ||||| |||||||||  ||| ||||||||||||||||||||||||||    
T  12454067 caaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaac 12454015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 14903594 - 14903541
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtg 102  Q
    |||||| |||| |||||||||||||||||||| |||||| || |||||| ||||    
T  14903594 atatgaatcatatcacttatatgttgttcaacgtctactcttacattcattgtg 14903541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 5787203 - 5787287
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||| |||||||||  |||||||| |||||||||||||||| |||  | |||  || ||||||||| || ||||| ||||||||    
T  5787203 atatgggtcatctcatgtatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacat 5787287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 5788410 - 5788478
Alignment:
Q  244 agagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttggg 312  Q
    ||||| ||||||||||| ||| ||| || || || ||||| |||||||||||||||||| ||| |||||    
T  5788410 agagtatagggaataaaatgatttgctggtaattttatgaatttgttgaaggagttggaaattattggg 5788478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 6910372 - 6910320
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgactatcca 159  Q
    |||||||||||||| |||| ||||||| | |||||||||||| ||||| ||||    
T  6910372 tttaactcacacttaacacgttaacattttttaatcaagtgtatgactctcca 6910320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 31963646 - 31963777
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| || ||||||||   ||| ||||||||||||| |||    ||||||| |||||||||||| |||| ||||||| || |||  |||||    
T  31963646 aatgagattgacaccagaacttcacatgaaaccttaagacattaggtattttggtcatctgacttatatgttgctcaaaatctactcttccatctaatgt 31963745  T
Q  102 gttattttaactcacacttgacacattaacat 133  Q
     | |  ||||||| || |||||||||||||||    
T  31963746 ataaagttaactcgcatttgacacattaacat 31963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 39403820 - 39403904
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||||||| |||||||||||||| || |||  || |||||||| |   | ||||||||||| || ||| ||||||||    
T  39403820 atatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaactttaactcacatttaacaaattaacat 39403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 45055177 - 45055217
Alignment:
Q  284 gtttgttgaaggagttggagatttttgggtaataaatttac 324  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45055177 gtttgttgaaggagtttgagatatttgggtaattaatttac 45055217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 45659927 - 45659850
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||||| ||||| ||||||  |||||| |||| ||| | ||| | ||||| ||||||| |||||||||    
T  45659927 tcatctcacttatatgtttttcaagatctac--ttgcatccaatttgtaactttgagtcacaattgacactttaacatct 45659850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 45660674 - 45660634
Alignment:
Q  284 gtttgttgaaggagttggagatttttgggtaataaatttac 324  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45660674 gtttgttgaaggagtttgagatatttgggtaattaatttac 45660634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 38015878 - 38016009
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38015878 tgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgt 38015977  T
Q  104 tattttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||||||||||||||||    
T  38015978 tattttaactcacacttgacacattaacatct 38016009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 9025041 - 9024946
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaa 144  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | | | ||||||||||||||||||||||||||||||| ||| ||||    
T  9025041 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctcttattcaa 9024946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 27594522 - 27594641
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||  ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| ||||||||||||||||  | |||||    
T  27594522 gacaccacatcttcaccttaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcattcaatgtggaactttaa 27594621  T
Q  112 ctcacacttgacacattaac 131  Q
     ||||||||||||| |||||    
T  27594622 atcacacttgacacgttaac 27594641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 20966207 - 20966121
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||| | | |||||||| |||||||||||| |||||||| |||||||  | ||||| |||||||||||||||||||||||    
T  20966207 atatgagtcatataatttatatgtcgttcaacatctattattgcatccaatgtggaactttaaatcacacttgacacattaacatct 20966121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 33013852 - 33013979
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactat-tgca-ttcaatgtgt 103  Q
    |||||| |||||||||| | || ||||  |||||||||||||    |||||||||||||| ||||||||||||| || || ||| || | ||||||||||    
T  33013852 tgagattgacatcacaattacatccaagttcttaagacatta----tgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgt 33013947  T
Q  104 tattttaactcacacttgacacattaacatct 135  Q
    ||||||||| |||||||||||||||| |||||    
T  33013948 tattttaacccacacttgacacattagcatct 33013979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 9012711 - 9012786
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaa 130  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||| ||||  ||||||||| ||||||||||||||||    
T  9012711 gtcagctcacttatatgttgctcaacatctactcttgaattcattgtgaaattttaactaacacttgacacattaa 9012786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 19910596 - 19910695
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||| |||||||  ||||| || |||| ||| | ||||||||||| |  |||||||||    
T  19910596 atatgactcatctcacttatatgttgttcaatatctactcttgcatacaatgtggaattttgacacacatttgtcgcattaacatctttatatcaagtgt 19910695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 4062648 - 4062611
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4062648 tatgagtttgttaaaggagttggagatttttgggtaat 4062611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 7332521 - 7332558
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7332521 tatgagtttgttaaaggagttggagatttttgggtaat 7332558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 11769735 - 11769859
Alignment:
Q  27 acccaaaatcttaagacat--tagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgaca 124  Q
    |||||||||||||| |||   || ||||| |||| |||| |||| ||||| |||| ||||||| || ||| |||| |   | ||||||| | ||||||||    
T  11769735 acccaaaatcttaaaacaacatatatatgggtcacctcagttatgtgttgatcaaaatctactcttccatccaattttgaactttaactaatacttgaca 11769834  T
Q  125 cattaacatctattaatcaagtgtg 149  Q
    ||||||||||| |||||||||||||    
T  11769835 cattaacatctcttaatcaagtgtg 11769859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 4062231 - 4062162
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  4062231 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 4062162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 8128432 - 8128501
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  8128432 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 8128501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 4063748 - 4063709
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  4063748 ttatatgagtttgttgaaggatttgaagatttttgggtaa 4063709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 10176006 - 10175893
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    ||||||| | ||||||||||| ||||||||||||||  ||||| |||||| ||||||| ||||  ||||||| || | |||||| | | |||  ||||||    
T  10176006 gacatcatatcttcacccaaagtcttaagacattagatatatgggtcatcacacttatgtgttactcaacatataatcttgcatac-acgtgaaatttta 10175908  T
Q  111 actcacacttgacac 125  Q
     ||||||||||||||    
T  10175907 gctcacacttgacac 10175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 19320306 - 19320377
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagata-tgagtcatctcacttatatgttgttcaacatc 83  Q
    |||| |||| |||| ||| ||| ||||||||||||| || || ||||| |||||||||||||||||||||||    
T  19320306 gacaccacatcttcgccctaaaccttaagacattaggtagtgggtcatatcacttatatgttgttcaacatc 19320377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 23570923 - 23570978
Alignment:
Q  261 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||| |||||  | |||||||||||||||||||||| |||||||||| ||||    
T  23570923 gtgagttgttgataaatctatgagtttgttgaaggagttgaagatttttggataat 23570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 29863730 - 29863769
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  29863730 ttatatgagtttgttgaaggatttgaagatttttgggtaa 29863769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 29865827 - 29865942
Alignment:
Q  18 cacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactca 115  Q
    |||| |||||||| ||| |||| || |||||  |||||| ||||  ||||||||||||  |||||||| ||| || ||| |||||||  | ||||||||     
T  29865827 cacatcttcaccccaaaccttatgaaattaggtatatgaatcataacacttatatgttactcaacatcaactcttacatccaatgtg--actttaactcg 29865924  T
Q  116 cacttgacacattaacat 133  Q
    ||||||||||||||||||    
T  29865925 cacttgacacattaacat 29865942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 29865455 - 29865492
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  29865455 tatgagtttgttaaaggagtttgagatttttgggtaat 29865492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 7332935 - 7333004
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||| ||||||| || ||| |||||||  |||| ||||| ||||||||||||||||||    
T  7332935 cacttatatgttactcaatatctactcttacatccaatgtg--atttgaactcgcacttgacacattaacat 7333004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 50331915 - 50332035
Alignment:
Q  17 tcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactc 114  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  50331915 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 50332014  T
Q  115 acacttgacacattaacatct 135  Q
    |||||||||||||||||||||    
T  50332015 acacttgacacattaacatct 50332035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 10020227 - 10020102
Alignment:
Q  26 cacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgac 123  Q
    ||||||||||||||||| ||||   ||||||||||||||||||||||||||||||| ||||||  || |||||||| |   | | ||| ||||||||||     
T  10020227 cacccaaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaaaatctacccttccattcaatatagaactctaaatcacacttgat 10020128  T
Q  124 acattaacatctattaatcaagtgtg 149  Q
    || |||||||||||||||||||||||    
T  10020127 acgttaacatctattaatcaagtgtg 10020102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 40056649 - 40056526
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||  ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||||||  | |||||    
T  40056649 gacaccacatcttcaccataaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 40056550  T
Q  112 ctcacacttgacacattaacatct 135  Q
     ||||||||||||| |||||||||    
T  40056549 atcacacttgacacgttaacatct 40056526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 14044376 - 14044290
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||||| |||| ||  | ||||| |||||||||||||||||||||||    
T  14044376 atatgggtcatatcacttaaatgttgttcaacatttactattgcatccaatatggaactttaaatcacacttgacacattaacatct 14044290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 30171174 - 30171253
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  30171174 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 30171253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 32971108 - 32971266
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| ||| || |||||||| ||||| ||||  |||||||||||| ||||||| |  | ||||| ||||||||||  |||||||||      
T  32971108 tgagattgacaccacatctttacacaaaatctaaagaccttagttatatgagtcatcacacttattttctattcaaaatctactattcaattcaatgtag 32971207  T
Q  104 tattttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgt 162  Q
     |  | |||||||||||||| ||||||||||  || |||||||||| ||||||||||||    
T  32971208 aacgtaaactcacacttgactcattaacatcgctttatcaagtgtgcgactatccacgt 32971266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 20779644 - 20779566
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||||||| ||||||| || ||| || ||| | || |||||||||| |||||||||||||||    
T  20779644 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 20779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 20934988 - 20935073
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||| |||||  ||| ||||||||||||||| |||| |   |||||||||||||| ||||||||||||||||    
T  20934988 atatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgacacattaacatct 20935073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 40416420 - 40416275
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    ||||||||| |||||   ||||||||||||||||||  ||||| |||||||| |||| || || |||||  | ||||||| ||| ||||||   |  | |    
T  40416420 gacatcacatcttcatataaaatcttaagacattaggtatatgggtcatctcgcttaaatattattcaaactttactatttcatccaatgtagaacgtca 40416321  T
Q  111 actcacacttgacacattaacatctattaatcaagtgtgtgactat 156  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||||    
T  40416320 actcatacttaacacattaacatctcttaatcaagtgtgtgactat 40416275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 25225304 - 25225403
Alignment:
Q  37 ttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 134  Q
    ||||||||||||  ||||| |||||| ||||| ||| || |||| |||||||||||||||||||||||  | |||||||||||  ||||| |||||||||    
T  25225304 ttaagacattaggtatatgggtcatcacacttgtatctttttcaccatctactattgcattcaatgtggaactttaactcacaaatgacatattaacatc 25225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 20788532 - 20788453
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| || |||||||  | ||||| | ||||||||||||||    
T  20788532 atatgagtcatatcacttatatattgttcaacatttactattgaatccaatgtggaactttaaataacacttgacacatt 20788453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 17764216 - 17764131
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||| ||||||||||||||||| ||| ||| |||| | || | |||||||  ||||||||||||||||| |||||||||||||    
T  17764216 atatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacattaacatct 17764131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 19065536 - 19065451
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||| ||||||||||||||||| ||| ||| |||| | || | |||||||  ||||||||||||||||| |||||||||||||    
T  19065536 atatgagtaatctcacttatatgttgctca-catatactctggcttacaatgtggaattttaactcacacttgtcacattaacatct 19065451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 32976462 - 32976547
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||| ||||||||||||    
T  32976462 atatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgatacattaacatct 32976547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 39183183 - 39183069
Alignment:
Q  18 cacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcac 116  Q
    |||| |||||||| ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| |||| |   | ||||| ||||    
T  39183183 cacatcttcaccctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatatagaactttaaatcac 39183084  T
Q  117 acttgacacattaac 131  Q
    ||||||||| |||||    
T  39183083 acttgacacgttaac 39183069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 10021224 - 10021092
Alignment:
Q  30 caaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    |||||||| ||||| ||||  |||||||||||| ||||||| |  | || || ||||||||||  |||||||||   |  | |||||||||||||| |||    
T  10021224 caaaatctaaagaccttagttatatgagtcatcacacttattttctatttaaaatctactattcaattcaatgtagaacgtaaactcacacttgactcat 10021125  T
Q  128 taacatctattaatcaagtgtgtgactatccac 160  Q
    |||||||| || |||||||||| ||||||||||    
T  10021124 taacatctctttatcaagtgtgcgactatccac 10021092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 52753117 - 52753017
Alignment:
Q  37 ttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatc 134  Q
    ||||||||||||||  || |||| || |||||||||||||||||| || ||||||| |||||||| | | ||||||||||| || | | |||||||||||    
T  52753117 ttaagacattagatgtattagtcttcgcacttatatgttgttcaatatatactatttcattcaatttataattttaactcatacataatacattaacatc 52753018  T
Q  135 t 135  Q
    |    
T  52753017 t 52753017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 51135 - 51083
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgactatcca 159  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||| ||||    
T  51135 tttaagtcacacttgacagattaacatcttttaatcaagtgtgtgactctcca 51083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 42400377 - 42400459
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||| ||||||||||||||||    
T  42400377 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacgtgacacattaacatct 42400459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 32970436 - 32970533
Alignment:
Q  38 taagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||  ||||| |||||||||||||||| || |||| |||||||| ||||||  ||||||  | ||| ||||||| |||||| ||||||||    
T  32970436 taagacattaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcacatttgacatattaacat 32970533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 36096207 - 36096126
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacatta 129  Q
    |||||||||||||| | ||||||| ||||| ||| | |||   ||||||||||| |||||||||| ||||||||||||||||    
T  36096207 tatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattattttaacccacacttgacacatta 36096126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 10021967 - 10021811
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| ||| || ||||||||  |||| ||||  |||||||||||| ||||||| |  | || || ||||||||||  |||||||||      
T  10021967 tgagattgacaccacatctttacacaaaatctatagaccttagttatatgagtcatcacacttattttctatttaaaatctactattcaattcaatgtag 10021868  T
Q  104 tattttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccac 160  Q
     |  | |||||||||||||| ||||||||||| || |||||||||  ||||||||||    
T  10021867 aacgtaaactcacacttgactcattaacatctctttatcaagtgttcgactatccac 10021811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 50241569 - 50241472
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagt 146  Q
    ||||||||||||||||||||||||| ||||  || |||| ||  || || | |   ||||||||||||||||||||||||||||| | ||| ||||||    
T  50241569 atatgagtcatctcacttatatgttattcataatttactcttatatccactatagaattttaactcacacttgacacattaacattttttattcaagt 50241472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 19817404 - 19817473
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  19817404 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 19817473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 34849788 - 34849899
Alignment:
Q  31 aaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    |||||||||||||||||  ||  | ||| ||||||||||||| ||  ||| ||||||| |||| ||||||||||  | ||||| |||||  |||||||||    
T  34849788 aaaatcttaagacattatgtacataagttatctcacttatattttcctcaccatctaccattgaattcaatgtgaaactttaattcacatatgacacatt 34849887  T
Q  129 aacatctattaa 140  Q
    ||||||| ||||    
T  34849888 aacatctcttaa 34849899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 12744020 - 12744055
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12744020 gtcatctcacttatatgttattcaacatctactatt 12744055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 14045470 - 14045395
Alignment:
Q  57 catctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    |||||||||||||||||||||||  | ||| ||| ||| |||| |   ||||||||||||||| ||||||||||||    
T  14045470 catctcacttatatgttgttcaaattttaccattccatccaatataaaattttaactcacactcgacacattaaca 14045395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 32264759 - 32264809
Alignment:
Q  261 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgg 311  Q
    |||||||| || || |||| |||||||||||||||| ||||||||||||||    
T  32264759 gtgagttgctggtaattatttgagtttgttgaaggacttggagatttttgg 32264809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 37835402 - 37835479
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctac 86  Q
    ||||||||| |||| |||||  ||||||| | |||   || |||||||||||||||||| |||||||||||||||||||    
T  37835402 agatggacaccacatcttcaatcaaaatcattagaacatatatatgagtcatctcactt-tatgttgttcaacatctac 37835479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 50489 - 50413
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaac 80  Q
    |||||| |||| |||| || || || ||| |||||||||||||  ||||||||||| |||||||| |||||||||||    
T  50489 tgagattgacaccacatctccatcccaaaccttaagacattaggtatatgagtcatatcacttatttgttgttcaac 50413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 19816985 - 19817022
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19816985 tatgagtttgttaaaggagtttgagatttttgggtaat 19817022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 40057400 - 40057311
Alignment:
Q  227 tgtgtgttttgtctattagagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| | | ||||| | || ||||  |||||||| |||||  | || ||||||||||||| |||||||||||||||| ||||    
T  40057400 tgtgtgttttgtttgtgagagtattggaaatagtgtgagttgttgataaatctacgagtttgttgaagaagttggagatttttggataat 40057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 432046 - 431978
Alignment:
Q  67 atatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||  ||||||| |||| |||||| ||||||   ||||||||||||| |||||||||||| ||||    
T  432046 atatgtttctcaacatatactcttgcatccaatgtcgaattttaactcacaattgacacattaatatct 431978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 9264857 - 9264817
Alignment:
Q  284 gtttgttgaaggagttggagatttttgggtaataaatttac 324  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  9264857 gtttgttgaaggagtttgagatatttgggtaattaatttac 9264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 14647 - 14522
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  14647 aatgagattgacatcacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaacatctactattgcattcaatgt 14548  T
Q  102 gttattttaactcacacttgacacat 127  Q
    ||||||||||||||||||||| ||||    
T  14547 gttattttaactcacacttgatacat 14522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 43387047 - 43387176
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||||||||||| |    
T  43387047 agattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatgtgtaa 43387146  T
Q  106 ttttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||||||||||||||    
T  43387147 ttttaactcacacttgacacattaacatct 43387176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 47783270 - 47783153
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacactt 120  Q
    |||||||| ||| |||||| |||||   ||||||||||| |||||||||||||||| ||||  |||| |||||  |||||||  | ||||||||||||||    
T  47783270 cttcaccctaaaccttaaggcattatgtatatgagtcatatcacttatatgttgttaaacaattactcttgcagccaatgtgaaactttaactcacactt 47783171  T
Q  121 gacacattaacatctatt 138  Q
    ||||||||||||||||||    
T  47783170 gacacattaacatctatt 47783153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 20306724 - 20306809
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  20306724 atatgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatct 20306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 21469816 - 21469893
Alignment:
Q  51 atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  21469816 atgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 21469893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 22636310 - 22636395
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||| ||| ||||||||| | |||||||||||| |||||||||| ||   |||||||||||||||||| | ||||||||||    
T  22636310 tatgagtcacctcccttatatgtagctcaacatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatct 22636395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 19065744 - 19065823
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  19065744 atatgggtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 19065823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 19113634 - 19113713
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  19113634 atatgggtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 19113713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 40946611 - 40946529
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  40946611 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatct 40946529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 43385111 - 43385199
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctat 137  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||  | | |   | ||||||||| |||||||| ||||||||||||    
T  43385111 atatgagtcatctcacatatatgttattcaacatctactattccatcaattctagaactttaactcatacttgacatattaacatctat 43385199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 1992514 - 1992432
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  | |||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  1992514 tgagtcatctcacttaaatgtttctcataa-ctactattgcatacaatataaaattttaactcacacttgacacattaacatct 1992432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 7844572 - 7844691
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||| | ||| |||||| |||||  ||||| || || ||||||||||||||||||||||||| |||||||| ||||||   | |||||    
T  7844572 gacaccacatcttcactctaaaccttaagtcattaatatatgggttatatcacttatatgttgttcaacatctattattgcatccaatgtagaactttaa 7844671  T
Q  112 ctcacacttgacacattaac 131  Q
     ||||| ||||||| |||||    
T  7844672 atcacaattgacacgttaac 7844691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 22538474 - 22538395
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| |||||||| || || |||||||| |||||||  | ||||| | ||||||||||||||    
T  22538474 atatgagtcatatcacttatatattgttcaatatttattattgcatccaatgtggaactttaaataacacttgacacatt 22538395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 30001736 - 30001818
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||| |||||||||||||||||||||    
T  30001736 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaacttacacttgacacattaacatct 30001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 49879228 - 49879122
Alignment:
Q  31 aaaatcttaagacattagat--atgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    |||| ||||| |||||||||  || |||| || |||||||| ||||||||| || ||||||| |||||||| | | |||||||||||||| ||  |||||    
T  49879228 aaaagcttaaaacattagatgtattagtcttcccacttatacgttgttcaatatatactatttcattcaatttataattttaactcacacatggtacatt 49879129  T
Q  129 aacatct 135  Q
    |||||||    
T  49879128 aacatct 49879122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 22541995 - 22541909
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||| || ||||||||||    
T  22541995 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaaattagaactttaactcacacttggcatattaacatct 22541909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 7843824 - 7843913
Alignment:
Q  227 tgtgtgttttgtctattagagtgtagggaataaagtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| | | ||||| |||| ||||  |||||||| |||||  | || ||||||||||||| |||||||||||||||| ||||    
T  7843824 tgtgtgttttgtttgtgagagtataggaaatagtgtgagttgttgataaatctacgagtttgttgaagaagttggagatttttggataat 7843913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 15524807 - 15524726
Alignment:
Q  54 agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | ||||||||||||||| || ||||||||||    
T  15524807 agtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttggcatattaacatct 15524726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 49882851 - 49882679
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| |||||||||||   ||| ||||| ||||||| |||    ||||||| || ||||||||| |||| |||||||||| ||| || |||    
T  49882851 aatgagattgacaccacaacttcacatgaaaccttaaaacattaggtattttggtcatctgacatatatgttgctcaaaatctactattccatccattgt 49882752  T
Q  102 gttattttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgt 174  Q
     | |  |||||||  | ||||||||||||||| |  ||||||| |||||| ||||| ||||| |||| |||||    
T  49882751 ataacgttaactcgtatttgacacattaacatatcctaatcaattgtgtgtctatctacgtccgtaattatgt 49882679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 3981705 - 3981637
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||| |||||||||||||||| |||||||||||||   | ||||| | |||||| ||||||||||||    
T  3981705 ttatatattgttcaacatctactcttgcattcaatgtaaaactttaatttacactttacacattaacat 3981637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 3982760 - 3982724
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatca 143  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3982760 tttaactcacacttgacacattaacatctcttaatca 3982724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 17006492 - 17006561
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  17006492 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 17006561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 34159599 - 34159530
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  34159599 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 34159530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 17001519 - 17001558
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  17001519 ttatatgagtttgttgaaggatttgaagatttttgggtaa 17001558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 19103057 - 19103112
Alignment:
Q  261 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||| |||||  | |||||||||||||||||||||| |||||||||| ||||    
T  19103057 gtgagttgttgataaatctatgagtttgttgaaggagttgaagatttttggataat 19103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 34161741 - 34161702
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  34161741 ttatatgagtttgttgaaggatttgaagatttttgggtaa 34161702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 45919473 - 45919511
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  45919473 atatgagtcatataacttatatgttgttcaacatctact 45919511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 49880615 - 49880577
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  49880615 atatgagtcatataacttatatgttgttcaacatctact 49880577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 17006075 - 17006112
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  17006075 tatgagtttgttaaaggagttagagatttttgggtaat 17006112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 19098995 - 19099067
Alignment:
Q  27 acccaaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattca 97  Q
    |||||||| |||||| ||| ||||||   |||||||||| |||||| ||||||||||| |||| |||||||||    
T  19098995 acccaaaaccttaagtcatcagatatatcagtcatctcatttatattttgttcaacatatacttttgcattca 19099067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 26531519 - 26531623
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    |||| |||| ||||||||| || ||||| | |||||||||  |||||||||||||||||  || |||  |||||||||||||||  ||||||  | ||||    
T  26531519 gacaccacatcttcacccataaccttaatatattagatatatgagtcatctcacttata--tttttctgcatctactattgcatctaatgtgaaacttta 26531616  T
Q  111 actcaca 117  Q
    |||||||    
T  26531617 actcaca 26531623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 1599808 - 1599692
Alignment:
Q  21 aacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacac 118  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1599808 aacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacac 1599709  T
Q  119 ttgacacattaacatct 135  Q
    |||||||||||||||||    
T  1599708 ttgacacattaacatct 1599692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 31737206 - 31737288
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 131  Q
    |||||| |||| |||||| |||||||||||||||||||| |||||| |||||||  ||||||||||||| |||||||||||||    
T  31737206 atatgaatcatatcacttgtatgttgttcaacatctactcttgcatccaatgtgaaattttaactcacaattgacacattaac 31737288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 33350293 - 33350372
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||  | ||||| | ||||||||||||||    
T  33350293 atatgagtcatatcacttatatattgttcaacatttactattgcattcaatgtggaactttaaataacacttgacacatt 33350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 2976805 - 2976684
Alignment:
Q  29 ccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacaca 126  Q
    ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||||||||| | || ||| |||||||   |||||||||||||||||||||    
T  2976805 ccaaagtcttaagacatgaggtatatgtgtcatctcacttacatgttgttcaacatctattctttcatacaatgtgaagttttaactcacacttgacaca 2976706  T
Q  127 ttaacatctattaatcaagtgt 148  Q
     ||| || | || |||||||||    
T  2976705 ataatatttctttatcaagtgt 2976684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 15878925 - 15878817
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgtgtgact 154  Q
    ||||||||| ||||||||||||||| ||||||| || ||| |||||| | |  |||||||||| ||||||||||||||| |  |||| || |||||||||    
T  15878925 gtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacatatcctaatgaattgtgtgact 15878826  T
Q  155 atccacgtc 163  Q
    ||| |||||    
T  15878825 atctacgtc 15878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 21984261 - 21984182
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||  | ||||| | ||||||||||||||    
T  21984261 atatgagtcatatcacttatatattgttcaacatttactattgcatccaatgtggaactttaaataacacttgacacatt 21984182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 11554334 - 11554467
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| ||||  || |||||||| ||||||||||||| ||  || ||||||||||| |||||||||| |||| |||||  ||||| ||||||    
T  11554334 aatgagattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgt 11554433  T
Q  102 gttattttaactcacacttgacacattaacatct 135  Q
       |  ||||||||||| ||||||||||||||||    
T  11554434 agaaggttaactcacacatgacacattaacatct 11554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 9449581 - 9449701
Alignment:
Q  31 aaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 128  Q
    ||||||||||| |||||   ||||||||| ||||||||||||||| ||||| || ||||  | ||| ||||||   ||  ||||||||||||||||| ||    
T  9449581 aaaatcttaaggcattatgcatatgagtcttctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacacgtt 9449680  T
Q  129 aacatctattaatcaagtgtg 149  Q
    ||||||| |||||||||||||    
T  9449681 aacatctcttaatcaagtgtg 9449701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 7428479 - 7428561
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  7428479 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaactcacacttgacacattaacatct 7428561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 24175141 - 24175016
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagatatgag--tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    ||||||||| ||||||| ||| |||||| ||||||| ||| ||  ||||||||||||||||||| ||||||| || |||||||| || |     ||||||    
T  24175141 gacatcacatcttcaccaaaagtcttaa-acattaggtataagggtcatctcacttatatgttgctcaacatatattattgcatacattactgaatttta 24175043  T
Q  111 actcacacttgacacattaacatctat 137  Q
    | |||||||||||||||||||| ||||    
T  24175042 attcacacttgacacattaacaactat 24175016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 4852944 - 4852811
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| ||||  || | |||||||||||||||||| | ||  || ||||||||||| |||||||||| |||| |||||  ||||| ||||||    
T  4852944 aatgagattgacaccacattttgatccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgt 4852845  T
Q  102 gttattttaactcacacttgacacattaacatct 135  Q
       |  ||||||||||| ||||||||||||||||    
T  4852844 agaaggttaactcacacatgacacattaacatct 4852811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 10191152 - 10191104
Alignment:
Q  108 ttaactcacacttgacacattaacatctattaatcaagtgtgtgactat 156  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  10191152 ttaactcacacttgatacattaacatcttttaatcaagtgtgcgactat 10191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 21988918 - 21988834
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||| |||||||||| |||||| ||||||||||| |||| ||||||||||  |   | |||||||||||||||||| ||||||||    
T  21988918 atatcagtcatctcatttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacat 21988834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 29214239 - 29214306
Alignment:
Q  16 atcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaaca 81  Q
    |||||| ||||| ||||| |||||||||| |||  |||||||||||||||||| ||||||||||||||    
T  29214239 atcacatcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgtatgttgttcaaca 29214306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 16279074 - 16279156
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||| |||||  |||  |||||||||||||| |||| |   ||||||||| |||||||||||||||||||||    
T  16279074 tgagtcatctcacttaaatgtttctcat-atctactattgcatacaatataaaattttaacttacacttgacacattaacatct 16279156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 24398047 - 24397965
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctacta 88  Q
    |||| ||||||||  ||||||||||||||||| ||||||||  |||| |||||||||| |||||||||| |||| || |||||    
T  24398047 agattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatacta 24397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 2953262 - 2953185
Alignment:
Q  71 gttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    ||||| |||||||||||||| ||| |||  ||  || |||||||||||||||||||  ||||||||| ||||||||||    
T  2953262 gttgtacaacatctactatttcatacaacttgaaatattaactcacacttgacacaacaacatctatcaatcaagtgt 2953185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 19660319 - 19660396
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacaca 126  Q
    ||||||| ||| ||| ||||||||||||||||| ||||| ||| |||||||| |  | |||||||||||||| |||||    
T  19660319 atatgaggcatatcatttatatgttgttcaacaactactcttggattcaatgaggaactttaactcacacttaacaca 19660396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 20872972 - 20872935
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||||||||||||||    
T  20872972 tatgagtttgttaaaggagttggagatttttgggtaat 20872935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 23410088 - 23410157
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  23410088 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 23410157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 26894961 - 26894913
Alignment:
Q  87 tattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||| |||||||||||||||| |||||||||| | ||||||||||    
T  26894961 tattgcatccaatgtgttattttaaatcacacttgatatattaacatct 26894913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 26895011 - 26894975
Alignment:
Q  16 atcacaacttcacccaaaatcttaagacattagatat 52  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26895011 atcacaacttcacccaaaatcttatgacattagatat 26894975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 9449955 - 9449994
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  9449955 ttatatgagtttgttgaaggatttgaagatttttgggtaa 9449994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 21986015 - 21985960
Alignment:
Q  261 gtgagttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||| |||||  | |||||||||||||||||||||| |||||||||| ||||    
T  21986015 gtgagttgttgataaatctatgagtttgttgaaggagttgaagatttttggataat 21985960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 4852020 - 4851983
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctac 86  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  4852020 atatgagtcatctcacgtatatgttattcaacatctac 4851983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 11555259 - 11555296
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctac 86  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  11555259 atatgagtcatctcacgtatatgttattcaacatctac 11555296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 23409670 - 23409707
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  23409670 tatgagtttgttaaaggagtttgagatttttgggtaat 23409707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 1599951 - 1599848
Alignment:
Q  30 caaaatcttaagacattagatatg--agtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 127  Q
    ||||| ||||||||||| |||||   |||||||||| |||||||||| |||| ||||||| || |||  ||||| | | ||||| | |||| ||||||||    
T  1599951 caaaaccttaagacattggatatattagtcatctcatttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacat 1599852  T
Q  128 taac 131  Q
    ||||    
T  1599851 taac 1599848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 20872556 - 20872487
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||| |  |||||||||||| || ||| |||||||  | ||||||||||||||||||| |||||||    
T  20872556 cacttatatgctactcaacatctactcttacatccaatgtg--actttaactcacacttgacacgttaacat 20872487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 21055743 - 21055783
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  21055743 ttatgtgattttgttgaaggagttgaagatttttgggtaat 21055783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 13228830 - 13228702
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 105  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13228830 agattgacatcacaacttcacccaaaattttaaga-attagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgtta 13228732  T
Q  106 ttttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||||||||||||||||    
T  13228731 ttttaactcacacttgacacattaacatct 13228702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 282059 - 281930
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgt 101  Q
    |||||||| |||||||||  | || ||||||||| |||||||||    |||||||||||||| ||||||||||||| || || |||   | |||||||||    
T  282059 aatgagattgacatcacagttacatccaaaatctcaagacatta----tgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgt 281964  T
Q  102 gttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||| ||||||||||||||||||||||    
T  281963 gttattttaacccacacttgacacattaacatct 281930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 6554630 - 6554533
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagt 146  Q
    ||||||||||||||||||||||||| ||||| ||||||| || ||| || | |   ||||||||||||||||||||||||||||||| ||| ||||||    
T  6554630 atatgagtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagt 6554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 17675240 - 17675359
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag-atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaa 111  Q
    |||| |||| |||||||| ||| |||||| |||||| ||||| || || ||||||||||||||||||||||||| || ||||| |||||||  | |||||    
T  17675240 gacaccacatcttcaccctaaaccttaagtcattagtatatgggttatatcacttatatgttgttcaacatctattaatgcatccaatgtggaactttaa 17675339  T
Q  112 ctcacacttgacacattaac 131  Q
     ||||||||||||| |||||    
T  17675340 atcacacttgacacgttaac 17675359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 49953018 - 49953101
Alignment:
Q  54 agtcatctcacttatatgttgttcaacatctactat-tgc-attcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||||||||| |||||||| ||||| ||| ||| |||||||||||||||||||  ||||||||||||||||||||||    
T  49953018 agtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttattttaatccacacttgacacattaacatct 49953101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 11559631 - 11559519
Alignment:
Q  23 cttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttga 122  Q
    ||||| |||||  |||||||||||| |||||  ||||| ||||||||||||||||||||| |||| |||||| |||| |   ||||||| |||||||| |    
T  11559631 cttcatccaaaggcttaagacattaaatatggatcatcacacttatatgttgttcaacatttactcttgcatacaatatcaaattttaagtcacacttta 11559532  T
Q  123 cacattaacatct 135  Q
    || ||||||||||    
T  11559531 catattaacatct 11559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 36697844 - 36697769
Alignment:
Q  58 atctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||| |||||||||||||| |||||||||| |||||| |||||||  | ||||||||||| |||| ||||||||||    
T  36697844 atctaacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacat 36697769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 13918326 - 13918224
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgtgtgact 154  Q
    ||||||||| |||||||||||| || ||||||| || ||| |||||| | |  |||||||||| ||||||||||||||| |  |||| || |||||||||    
T  13918326 gtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacatatcctaatgaattgtgtgact 13918227  T
Q  155 atc 157  Q
    |||    
T  13918226 atc 13918224  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 314412 - 314315
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagt 146  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || ||   |   |||||||||||| |||||||||||||||||| ||| ||||||    
T  314412 atatgagtcatctcacttatatgttattcaaaatctactcttctatccaccatagaattttaactcacgcttgacacattaacatctcttattcaagt 314315  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 35695134 - 35695054
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||  |||||||||||||||||| |||||||| ||||| || |||||  | | |||||||||||||||||||||||||    
T  35695134 tgagtcaaatcacttatatgttgttcagcatctactcttgca-tccatgtggaactctaactcacacttgacacattaacat 35695054  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 6561065 - 6560985
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||||||||||||||| |||||||||| ||| || |||| ||  | ||||||||||| |||| |||||| |||||    
T  6561065 gtcatctcacttatatgttgtttaacatctacttttgtatccaatatggaactttaactcacatttgatacattagcatct 6560985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 39974941 - 39974854
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||||||  |||| ||||||| ||||| ||||| |||   ||||||||| |||||||||||| |||||||||||||||| |||||    
T  39974941 tatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttattttaacccacacttgacacattaccatct 39974854  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 42729464 - 42729545
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| || |||   |||||||||  |||||||||| ||||||    
T  42729464 atatgagtcatctcacttatatgtttctcaacatgtactattgcatacattgttgaattttaact--cacttgacacgttaaca 42729545  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 56340350 - 56340282
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaac 131  Q
    ||||||||||||||||||||||| |||||||| |||| ||  | ||||| ||||||||||||| |||||    
T  56340350 acttatatgttgttcaacatctattattgcatccaatatggaactttaaatcacacttgacacgttaac 56340282  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 316586 - 316508
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||| |||||||||||| |||| ||||||| || |||  ||||| | |||||||||| || |||||||||||||||    
T  316586 gtcatctgacttatatgttgctcaaaatctactctttcatctaatgtataattttaactcgcatttgacacattaacat 316508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 24183432 - 24183501
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||| ||| |||||||| |||||| |||||||  ||||||||| |||||| ||||||||||||||    
T  24183432 ttatatgttgctca-catctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatct 24183501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 50158268 - 50158198
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||| ||||||| |||| ||||||  ||||||  | ||||||||| |||||||||||||||||||    
T  50158268 ttatatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatct 50158198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 14266234 - 14266310
Alignment:
Q  25 tcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaat 99  Q
    |||||| ||||||||||| |||||  ||||| |||||||||||||| ||||||||||  ||||||||| ||| ||||    
T  14266234 tcaccctaaatcttaagaaattagttatatgggtcatctcacttatttgttgttcaaattctactatttcatccaat 14266310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 35695738 - 35695693
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaataaatttac 324  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||    
T  35695738 tatgagtttattgaaggagttggagatttttggataataactttac 35695693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 55050534 - 55050497
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55050534 tatgagtttgttaaaggagttggagatttttgggtaat 55050497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 55050117 - 55050048
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  55050117 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 55050048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 9694408 - 9694459
Alignment:
Q  30 caaaatcttaagacattagat-atgagtcatctcacttatatgttgttcaac 80  Q
    ||||||||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  9694408 caaaatcttaagacatttgattatgagtcatctcacttataagatgttcaac 9694459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 39977281 - 39977246
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39977281 gtcatctcacttatatgttattcaacatctactatt 39977246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 42757527 - 42757659
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcatt--caatgt 101  Q
    |||||| ||||||||   |||||||||| || |||||||||||  |||||| | ||||| || ||||||| ||||||||||||| ||||||   ||||||    
T  42757527 tgagatcgacatcaccttttcacccaaagtcctaagacattaggtatatga-taatctccctcatatgtttttcaacatctactcttgcatatccaatgt 42757625  T
Q  102 gttattttaactcacacttgacacattaacatct 135  Q
       | ||| ||||||| |||||||||||||||||    
T  42757626 taaacttttactcacaattgacacattaacatct 42757659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 55051639 - 55051600
Alignment:
Q  276 ttatatgagtttgttgaaggagttggagatttttgggtaa 315  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  55051639 ttatatgagtttgttgaaggatttgaagatttttgggtaa 55051600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 313155 - 313117
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  313155 atatgagtcatataacttatatgttgttcaacatctact 313117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 6553372 - 6553334
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  6553372 atatgagtcatataacttatatgttgttcaacatctact 6553334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 28475656 - 28475710
Alignment:
Q  81 atctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||||| |||||| |||||||  ||||||||| |||||| ||||||||||||||    
T  28475656 atctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatct 28475710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 4236390 - 4236451
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaa 168  Q
    ||||| |||||||||| |||| ||||| | |||||||| ||||| ||| |||||||||||||    
T  4236390 tttaattcacacttgatacatcaacatttgttaatcaattgtgtaactctccacgtctgtaa 4236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 4279721 - 4279782
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaa 168  Q
    ||||| |||||||||| |||| ||||| | |||||||| ||||| ||| |||||||||||||    
T  4279721 tttaattcacacttgatacatcaacatttgttaatcaattgtgtaactctccacgtctgtaa 4279782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 22681165 - 22681241
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaac 80  Q
    |||||| |||| |||| || ||||| ||| |||||||||||||  ||||||||||| |||||||| | |||||||||    
T  22681165 tgagattgacaccacatctccaccctaaaccttaagacattaggtatatgagtcatatcacttatttattgttcaac 22681241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 26289579 - 26289616
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  26289579 tatgagtttgttaaaggagtttgagatttttgggtaat 26289616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 26289997 - 26290063
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaa 130  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| |||||||||||||||    
T  26289997 cacttatatgttactcaacatctactcttacatacaatgtg--actttaactcgcacttgacacattaa 26290063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 48683248 - 48683183
Alignment:
Q  70 tgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    ||||| ||||| || ||| |||| |||||||||  | ||||||||||| |||||||||||||||||    
T  48683248 tgttgctcaacttccactcttgctttcaatgtgaaactttaactcacatttgacacattaacatct 48683183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 11560299 - 11560220
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||| ||||| |||| ||| || |||| |||||| |||||| | | |||||||||| | ||||||||||||||||    
T  11560299 gtcatctcacgtatatattgt-caatatatactcttgcatccaatgtataagtttaactcacccatgacacattaacatct 11560220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 42756767 - 42756898
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| ||||| |||||| |||||||| ||||  ||||  ||||| | |||||||||||| |||| || || | |||||| ||||||      
T  42756767 tgagattgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgcatccaatgtag 42756866  T
Q  104 tattttaactcacacttgacacattaacatct 135  Q
     | ||| |||||||  ||||||||||||||||    
T  42756867 aagttttactcacaaatgacacattaacatct 42756898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 50164 - 50290
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| ||||||||||||||||||||| |||| ||||||| |||||  |||| |||||  ||||||||||||| |||||||||||||||||||| ||||    
T  50164 tgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactattgcattcaacgtgt 50263  T
Q  104 tattttaactcacacttgacacattaa 130  Q
    |||||||||| |||||||||| |||||    
T  50264 tattttaactgacacttgacatattaa 50290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 47112 - 47223
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattagatatgagt--catctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    |||| |||| ||||||||||| ||||||||||| || |||| ||  |||||||||||||||||||||||||||||||||| ||| ||| |||  | ||||    
T  47112 gacaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatgttgttcaacatctactattccatacaacgtgaaacttta 47211  T
Q  111 actcacacttga 122  Q
    ||||||||||||    
T  47212 actcacacttga 47223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 41449 - 41512
Alignment:
Q  59 tctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttga 122  Q
    |||||||||||| |||||||||||| ||| || ||| ||| |||  ||||||||||||||||||    
T  41449 tctcacttatatattgttcaacatcaactcttccatacaacgtgaaattttaactcacacttga 41512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 29168 - 29245
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||  | ||||||||||| |||| ||||||||||    
T  29168 tcatctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacat 29245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 43989777 - 43989679
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    |||||| |||||||||||| |||||  ||| ||||||||||||||| |||| |   ||||||||||||||||||||||||||||||| | ||| ||||||    
T  43989777 atatgaatcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagtgt 43989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 6677088 - 6677207
Alignment:
Q  16 atcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaact 113  Q
    |||||| ||||| | |||| ||||||||||| |  |||||||||||||||| |||||||||||||| || |||  || |||||||| |   |||||||||    
T  6677088 atcacatcttcatctaaaaccttaagacatttggtatatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaattttaact 6677187  T
Q  114 cacacttgacacattaacat 133  Q
    ||||||| ||| ||||||||    
T  6677188 cacacttaacaaattaacat 6677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 36837375 - 36837445
Alignment:
Q  107 tttaactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtgac 177  Q
    ||||||| |||||| |||||||||||||| |||||||||||| ||| | || |||||||||| ||||||||    
T  36837375 tttaactaacacttaacacattaacatctcttaatcaagtgtttgattctctacgtctgtaattatgtgac 36837445  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 29912714 - 29912594
Alignment:
Q  13 gacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttatttta 110  Q
    |||| |||| |||||||| |||||||| || |||||  |||||  ||||  ||||||||||||  |||||||||||| || ||| |||||||  | ||||    
T  29912714 gacaacacatcttcaccccaaatcttatgaaattaggtatatggatcataacacttatatgttactcaacatctactcttacatccaatgtg--acttta 29912617  T
Q  111 actcacacttgacacattaacat 133  Q
    ||||||||||||| |||||||||    
T  29912616 actcacacttgacgcattaacat 29912594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 2452221 - 2452123
Alignment:
Q  36 cttaagacattagatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||| |||||| | |||||||   |||||||||||| ||| |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| ||||    
T  2452221 cttaaggcattaggtttgagtcaaaacacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatct 2452123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 38788897 - 38789018
Alignment:
Q  14 acatcacaacttcacccaaaatcttaagacatta-gatatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaac 112  Q
    |||||||| ||||| ||||| ||| ||| ||||| ||||||  |||| | | |||||||||| |||  ||||||| |||||| |||||||  ||||||||    
T  38788897 acatcacaccttcatccaaagtctcaaggcattacgatatggatcatattatttatatgttgctcat-atctactcttgcatacaatgtgaaattttaac 38788995  T
Q  113 tcacacttgacacattaacatct 135  Q
    | |||||| ||||||||||||||    
T  38788996 ttacacttaacacattaacatct 38789018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 4120006 - 4120071
Alignment:
Q  60 ctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacac 125  Q
    ||||||||||||||| |||||||| ||| ||| || |||||||  ||||||||| |||||||||||    
T  4120006 ctcacttatatgttgctcaacatccacttttgaatccaatgtgaaattttaactaacacttgacac 4120071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 2928038 - 2927976
Alignment:
Q  32 aaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgc 92  Q
    |||||||||||||||||  ||||| |||  || ||||||||||||||||||||||||| ||||    
T  2928038 aaatcttaagacattagttatatgggtctcctaacttatatgttgttcaacatctacttttgc 2927976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 4110362 - 4110437
Alignment:
Q  56 tcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    |||||||||||| |||||| |||| || ||||||||||||||||||  || |||||| || |  ||||||||||||||    
T  4110362 tcatctcacttacatgttgctcaatatatactattgcattcaatgtagtagtttaacccata--tgacacattaacat 4110437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 24708517 - 24708451
Alignment:
Q  63 acttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacatta 129  Q
    |||||||||||| ||||||| |||| || ||| |||||| | ||||||||||| | |||||||||||    
T  24708517 acttatatgttgctcaacatatactcttacatacaatgtataattttaactcataattgacacatta 24708451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 26374611 - 26374649
Alignment:
Q  52 tgagtcatctcacttatatgttgttcaacatctactatt 90  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  26374611 tgagtcatctcacttatatcttattcaacatctactatt 26374649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 29913080 - 29913043
Alignment:
Q  279 tatgagtttgttgaaggagttggagatttttgggtaat 316  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  29913080 tatgagtttgttaaaggagttggagatatttgggtaat 29913043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 45610345 - 45610390
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatg 100  Q
    ||||||| |||||||||||||||| |||||||| || |||||||||    
T  45610345 gtcatctaacttatatgttgttcaccatctactttttcattcaatg 45610390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 1942 - 1845
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    ||||||| |||||||||| |||||  ||| ||||||||||||||| |||| |   ||||||||||||||||||||||||||||||| | ||| ||||||    
T  1942 tatgagttatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgacacattaacatctctcaattaagtgt 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 12687 - 12574
Alignment:
Q  24 ttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttg 121  Q
    ||||||||||||||||||  || || |||  | ||||||||||||||||||||||||| || ||||||| ||| |||||| | | ||||||||| ||||     
T  12687 ttcacccaaaatcttaaggtatcaggtatacgtgtcatctcacttatatgttgttcaaaatatactattccatccaatgtataactttaactcaaacttc 12588  T
Q  122 acacattaacatct 135  Q
    | ||||||||||||    
T  12587 atacattaacatct 12574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 18337 - 18270
Alignment:
Q  109 taactcacacttgacacattaacatctattaatcaagtgtgtgactatccacgtctgtaagtatgtga 176  Q
    ||||| ||||||||||||||||||| | |||||||||||||  ||||||||| | ||||| |||||||    
T  18337 taactaacacttgacacattaacatatcttaatcaagtgtgctactatccacatttgtaattatgtga 18270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 6424 - 6501
Alignment:
Q  55 gtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaaca 132  Q
    ||||||||||||||||||||||||||||||| | |||||| |||| ||  | ||||||||||| |||| |||||||||    
T  6424 gtcatctcacttatatgttgttcaacatctatttttgcatccaatatggaactttaactcacatttgatacattaaca 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 7537 - 7668
Alignment:
Q  4 aatgagatggacatcacaacttcacccaaaatcttaagacattagatatga--gtcatctcacttatatgttgttcaacatctactattgcattcaatgt 101  Q
    |||||||| |||| |||||||||||   ||| ||||||||||||| |||    ||||||| |||||||||||| |||| ||||||| || ||| ||||||    
T  7537 aatgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgt 7636  T
Q  102 gttattttaactcacacttgacacattaacat 133  Q
     | |  ||||||| || |||||||||||||||    
T  7637 ataacgttaactcgcatttgacacattaacat 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 826 - 921
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaa 144  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   | ||| ||||||||||||||||||||||||| ||| ||||    
T  826 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaacttttactcacacttgacacattaacatctcttattcaa 921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 2091 - 2129
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  2091 atatgagtcatataacttatatgttgttcaacatctact 2129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 37129 - 37032
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagt 146  Q
    |||||| |||||||||||||||||| ||||| ||||||| ||  || || | |   ||||||||||||||||||||||||||||||| ||| ||||||    
T  37129 atatgaatcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagt 37032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 1457 - 1350
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagtgt 148  Q
    ||||| |||||||||||||||| || ||||| ||||| | || ||||||||||   |  || |||||||||||||||||||  |||| |||||||| |||    
T  1457 atatgggtcatctcacttatatattattcaaaatctattcttccattcaatgttgaacattcactcacacttgacacatta--atctcttaatcaaatgt 1360  T
Q  149 gtgactatcc 158  Q
    |||| |||||    
T  1359 gtgattatcc 1350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 35492 - 35454
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  35492 atatgagtcatataacttatatgttgttcaacatctact 35454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 188 - 321
Alignment:
Q  6 tgagatggacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgt 103  Q
    |||||| |||| |||| || || || ||| |||||||||||||||||  ||||||| |||||||| ||||||||||||  |||| |||||  ||||| |     
T  188 tgagattgacaccacatctccatcctaaaccttaagacattagatatatgagtcatatcacttatttgttgttcaacagttactcttgcagccaatgcga 287  T
Q  104 tattttaactcacacttgacacattaacatctatt 138  Q
     |  |||||||||||||||||||||||||| ||||    
T  288 ga-cttaactcacacttgacacattaacatttatt 321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 18450 - 18547
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctattaatcaagt 146  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||  || || | |   |||||||||||||||||||  |||||||||| ||| ||||||    
T  18450 atatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagt 18547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 19707 - 19745
Alignment:
Q  49 atatgagtcatctcacttatatgttgttcaacatctact 87  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  19707 atatgagtcatataacttatatgttgttcaacatctact 19745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 30970 - 30887
Alignment:
Q  8 agatggacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactat 89  Q
    |||| ||||||||  ||||||||||||||||| ||||||||  |||| |||||||||| |||||||||| |||| || ||||||    
T  30970 agattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactat 30887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 279 - 360
Alignment:
Q  53 gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||| |||| |||||  ||| ||||||||||||||| |||| |   ||||||||||||||||| |||||||||||||    
T  279 gagtcatctcgcttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacttgccacattaacatct 360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 2376 - 2290
Alignment:
Q  50 tatgagtcatctcacttatatgttgttcaacatctactatt---gcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||| |||||||| || ||||||| |||||||||| || |   |||| |||||||  ||||||||| |||||||||||||||||||    
T  2376 tatgaatcatctcatttgtatgttgctcaacatctattactcctgcatccaatgtggaattttaacttacacttgacacattaacat 2290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 3744 - 3686
Alignment:
Q  265 gttgatgatatttatatgagtttgttgaaggagttggagatttttgggtaataaattta 323  Q
    |||||||||| |||| | ||||||||||||||||||| |||||| || |||| ||||||    
T  3744 gttgatgataattattttagtttgttgaaggagttggggattttaggataattaattta 3686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 31023 - 31092
Alignment:
Q  62 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 133  Q
    ||||||||||||  |||||||||||| || ||| |||||||  | |||||||| ||||||||||||||||||    
T  31023 cacttatatgttactcaacatctactcttacatccaatgtg--actttaactcgcacttgacacattaacat 31092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 5233 - 5164
Alignment:
Q  65 ttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatct 135  Q
    |||||||||| ||| |||||||| |||||| |||||||  ||||||||| |||||| | ||||||||||||    
T  5233 ttatatgttgctca-catctactcttgcatacaatgtgaaattttaacttacacttaaaacattaacatct 5164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 41080 - 41046
Alignment:
Q  282 gagtttgttgaaggagttggagatttttgggtaat 316  Q
    ||||||||| |||||||||||||||||||||||||    
T  41080 gagtttgttaaaggagttggagatttttgggtaat 41046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 45618 - 45671
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttg 74  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||    
T  45618 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttg 45671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 153169 - 153116
Alignment:
Q  23 cttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttg 74  Q
    ||||||||||||||||||||||||||  ||||  ||||||||| ||||||||||    
T  153169 cttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttg 153116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1819 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1819
Description:

Target: scaffold1819; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 179 - 223
Alignment:
Q  36 cttaagacattagatatgagtcatctcacttatatgttgttcaac 80  Q
    |||||||||||  || |||||||||||||||||||||| ||||||    
T  179 cttaagacatttaatttgagtcatctcacttatatgttattcaac 223  T

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Target: scaffold1104 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1104
Description:

Target: scaffold1104; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 1701 - 1745
Alignment:
Q  36 cttaagacattagatatgagtcatctcacttatatgttgttcaac 80  Q
    |||||||||||  || |||||||||||||||||||||| ||||||    
T  1701 cttaagacatttaatttgagtcatctcacttatatgttattcaac 1745  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 43702 - 43666
Alignment:
Q  108 ttaactcacacttgacacattaacatctattaatcaa 144  Q
    |||||||||||||||||||||||||| | ||||||||    
T  43702 ttaactcacacttgacacattaacatattttaatcaa 43666  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 128292 - 128372
Alignment:
Q  58 atctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctatt 138  Q
    ||||||||||||||||  |||| || ||||| ||||  |||| ||  |||||||||||||| |||||||| ||||| ||||    
T  128292 atctcacttatatgttactcaatatatactactgcagccaatatggaattttaactcacacatgacacataaacatatatt 128372  T

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