View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6979_low_2 (Length: 472)
Name: NF6979_low_2
Description: NF6979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6979_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 202 - 455
Target Start/End: Complemental strand, 5063646 - 5063392
Alignment:
| Q |
202 |
tctctcatagttgaaaatgtgaatgaaaccttcatagttaacaccctttggagagagaagactttcactgccctcaacaaccactaacaccaaatgtaac |
301 |
Q |
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| T |
5063646 |
tctctcatagttgaaaatgtgaatgaaaccttcatagttaacaccctttggagagagaagactttcactaccctcaacaaccactaacaccaaatgtaac |
5063547 |
T |
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| Q |
302 |
agaacaaaaaaggtaacaagccaaacaaacgctttaacacgttccatgaaacaa-aaaagtttgaaacttttgtagtgggatcttctgttctaagctttt |
400 |
Q |
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| T |
5063546 |
agaacaaaaaaggtaacaagccaaacaaacactttaacacgttccatgaaacaaaaaaagtttgaaacttttttagtgggatcttctgttctaagctttt |
5063447 |
T |
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| Q |
401 |
ggaaaagctaataaatgaaatgaagaaaacccttttgataaatctagcttcttgc |
455 |
Q |
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| T |
5063446 |
ggaaaagctaataaatgaaatcaagaaaacccttttgataaatctagcttcttgc |
5063392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 5063833 - 5063707
Alignment:
| Q |
15 |
gacatcaccctcagaagaacaaccaaccatattccaagtacaaggatcaaccgaattaatatcccaaccattcatagcatgcaacccatcattcatctta |
114 |
Q |
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| T |
5063833 |
gacataaccctcagaagaacaaccaaccatattccaagtacaaggatcaaccgaattaatatcccaaccattcatagcatgcaacccatcattcatctta |
5063734 |
T |
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| Q |
115 |
ttcttaatagacatcaaagcagccact |
141 |
Q |
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| T |
5063733 |
ttcttcatagacatcaaagcagccact |
5063707 |
T |
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