View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6979_low_4 (Length: 452)
Name: NF6979_low_4
Description: NF6979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6979_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 33810865 - 33811290
Alignment:
| Q |
20 |
tcaggcaaagttggaaaacgttgagaatcattgcaat-----tagatgacaaggtttcgttgaacccaagcataatccattttctgatcacctgaaagat |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810865 |
tcaggcaaagttggaaaacgttcagaatgattgcaatagtcatagatgacaaggtttcgttgaacccaagcataatccattttctgatcacctgaaagaa |
33810964 |
T |
|
| Q |
115 |
gctaagcatcatattgatcccaccaattttttgttgtggttgaaacacatttaggaaatggatcttcccattgacaagcatcaacactaaagtctttgta |
214 |
Q |
| |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810965 |
gccaagcatcatactgatcccaccaattttttgttgtggttgaaacacatttaggaaatggatcttcccattgacaagcatcaacactaaagtctttgta |
33811064 |
T |
|
| Q |
215 |
ggatgacacaaatggtgctaatttccaatttgttttttcaagtccacctcttgtagcctaatcatctgcattccatacacttgaaaacaagtacattggt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811065 |
ggatgacacaaatggtgctaatttccaatttgttttttcaagtccacctcttgtagcccaatcatctgcattccatacacttgaaaacaagtacattggt |
33811164 |
T |
|
| Q |
315 |
ttctaatttgggaagaaattgtttggtttgtcattgttcttgaacatcc----ttattggaactctatccacaaaaactttgatgtcattttttgacttg |
410 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811165 |
ttctaatttgggaagatattgtttggtttgtcattgttcttgaacacccttaattattggaactctatccacaaaaactttgatgtcattttttgacttg |
33811264 |
T |
|
| Q |
411 |
ggttataagattaagaacaccaataa |
436 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
33811265 |
ggttataagattaagaacaccaataa |
33811290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 47496212 - 47495840
Alignment:
| Q |
20 |
tcaggcaaagttggaaaacgttgagaatcattgcaat-----tagatgacaaggtttcgttgaacccaagcataatccattttctgatcacctgaaagat |
114 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47496212 |
tcaggcaaagttggaaagcgttcagaatcattacaatagtcatagatgacaaggtttcgttgaacccaagcataatccattttctgatcacctgaaagat |
47496113 |
T |
|
| Q |
115 |
gctaagcatcatattgatcccaccaattttttgttgtggttgaaacacatttaggaaatggatcttcccattgacaagcatcaacactaaagtctttgta |
214 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47496112 |
gccaagcatcatattgatcccaccaattttttgttgtggttgaaacacatttaggaaatggatcttcccattgacaagcatcaacactaaagtctttgta |
47496013 |
T |
|
| Q |
215 |
ggatgacacaaatggtgctaatttccaatttgttttttcaagtccacctcttgtagcctaatcatctgcattccatacacttgaaaacaagtacattggt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47496012 |
ggatgacacaaatggtgctaatttccaatttgttttttcaagtccacctcttgtagcccaatcatctgcattccatacacttgaaaacaagtacattggt |
47495913 |
T |
|
| Q |
315 |
ttctaatttgggaagaaattgtttggtttgtcattgttcttgaacatccttattggaactctatccacaaaaa |
387 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
47495912 |
ttctcatttgggaagaaattgtttggtttgtcattgttcttgaacacccttattggaactctatccacaaaaa |
47495840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 47495497 - 47495450
Alignment:
| Q |
389 |
tttgatgtcattttttgacttgggttataagattaagaacaccaataa |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47495497 |
tttgatgtcattttttgacttgggttataagattaagaacaccaataa |
47495450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 33450509 - 33450450
Alignment:
| Q |
238 |
tccaatttgttttttcaagtccacctcttgtagcctaatcatctgcattccatacacttg |
297 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| ||||| |
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|
| T |
33450509 |
tccaatttgttttaacaagtccacctcttgtggcccaattatctgcattccataaacttg |
33450450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 53488670 - 53488732
Alignment:
| Q |
237 |
ttccaatttgttttttcaagtccacctcttgtagcctaatcatctgcattccatacacttgaa |
299 |
Q |
| |
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||||||| |||||| |||| ||||||||||| ||| ||||||| |||||||||| ||||||| |
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|
| T |
53488670 |
ttccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaa |
53488732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 32709885 - 32709833
Alignment:
| Q |
239 |
ccaatttgttttttcaagtccacctcttgtagcctaatcatctgcattccata |
291 |
Q |
| |
|
||||| |||||| || | |||||||||||| ||| |||||||||||||||||| |
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|
| T |
32709885 |
ccaatctgttttctctaatccacctcttgttgcccaatcatctgcattccata |
32709833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 37188995 - 37188959
Alignment:
| Q |
253 |
caagtccacctcttgtagcctaatcatctgcattcca |
289 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||| |
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| T |
37188995 |
caagtccacctcttgtagcccaatcatcagcattcca |
37188959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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