View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6979_low_6 (Length: 322)
Name: NF6979_low_6
Description: NF6979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6979_low_6 |
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| [»] scaffold0059 (2 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 42 - 307
Target Start/End: Complemental strand, 3687 - 3422
Alignment:
| Q |
42 |
atcaaccattacaatggaagcccaagttaagctatcaggttcggtataaagttattttattcaagggcatataaaatttatgaaagaggaaccccatgtt |
141 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||| || ||||||||||||||||||||||| |
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| T |
3687 |
atcaacaattacgatggaagcccaagttaacctatcaggttccgtataaagttgttttattcaagtgcatatataagttatgaaagaggaaccccatgtt |
3588 |
T |
|
| Q |
142 |
aagcttatatctttcacctatgtctgatactttggtgtggctttgactaagggtcgtaatctattacaaagagtgctaataggtgaactaaatatcaaag |
241 |
Q |
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| T |
3587 |
atgcttatatctttcacctatgtcagatgctttggtgtggctttgaccaagggtcgtaatttattaccaagagtgctaataggtgaactaaatatcaaag |
3488 |
T |
|
| Q |
242 |
gtgtcttctcaggtggatccaaattctgaacctgaagaagctggaacaagaaggggaagaaggaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3487 |
gtgtcttctcaggtggatccaaattctgaacctgaagaagctgaaacaagaaggggaagaaggaaa |
3422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 307
Target Start/End: Complemental strand, 9847 - 9581
Alignment:
| Q |
42 |
atcaaccattacaatggaagcccaagttaagctatcaggttcggtataaa-gttattttattcaagggcatataaaatttatgaaagaggaaccccatgt |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
9847 |
atcaacaattacaatggaagcccaagttaagctatcagattccgtataaaagttattttattcaagtgcatatataagttatgaaagaggaaccccatgt |
9748 |
T |
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| Q |
141 |
taagcttatatctttcacctatgtctgatactttggtgtggctttgactaagggtcgtaatctattacaaagagtgctaataggtgaactaaatatcaaa |
240 |
Q |
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| T |
9747 |
taagcttatatctttcatctatgtcagaagctttggtgtggctttgaccaagggtcgtaatttattaataagagtgctaataggtgaactaaaaatctaa |
9648 |
T |
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| Q |
241 |
ggtgtcttctcaggtggatccaaattctgaacctgaagaagctggaacaagaaggggaagaaggaaa |
307 |
Q |
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| T |
9647 |
ggtgtattctcaggtggatccaaattctgaacctgaagaagctggaacaagaaggggaagaaggaaa |
9581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 235551 - 235817
Alignment:
| Q |
42 |
atcaaccattacaatggaagcccaagttaagctatcaggttcggtataaa-gttattttattcaagggcatataaaatttatgaaagaggaaccccatgt |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
235551 |
atcaacaattacaatggaagcccaagttaagctatcagattccgtataaaagttattttattcaagtgcatatataagttatgaaagaggaaccccatgt |
235650 |
T |
|
| Q |
141 |
taagcttatatctttcacctatgtctgatactttggtgtggctttgactaagggtcgtaatctattacaaagagtgctaataggtgaactaaatatcaaa |
240 |
Q |
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||||||||||||||||| ||||||| || |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||| || |
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| T |
235651 |
taagcttatatctttcatctatgtcagaagctttggtgtggctttgaccaagggtcgtaatttattaataagagtgctaataggtgaactaaaaatctaa |
235750 |
T |
|
| Q |
241 |
ggtgtcttctcaggtggatccaaattctgaacctgaagaagctggaacaagaaggggaagaaggaaa |
307 |
Q |
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| T |
235751 |
ggtgtattctcaggtggatccaaattctgaacctgaagaagctggaacatgaaggggaagaaggaaa |
235817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 244384 - 244511
Alignment:
| Q |
124 |
aaagaggaaccccatgttaagcttatatctttcacctatgtctgatactttgg-tgtggctttgactaagggtcgtaatctattacaaagagtgctaata |
222 |
Q |
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||||||||| |||||||||| ||| | |||| | ||||||| ||| |||||| |||||||||||| ||| | | |||| |||||| ||||||||||||| |
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| T |
244384 |
aaagaggaagcccatgttaaacttgcaccttttatctatgtcagatgctttgggtgtggctttgaccaagtgccataatttattactaagagtgctaata |
244483 |
T |
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| Q |
223 |
ggtgaactaaatatcaaaggtgtcttctc |
251 |
Q |
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| T |
244484 |
gatgaactgca-atcaaaggtgttttctc |
244511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 22601395 - 22601208
Alignment:
| Q |
120 |
tatgaaagaggaaccccatgttaagcttatatctttcacctatgtctgatactttggtgtggctttgactaagggtcgtaatctattacaaagagtgcta |
219 |
Q |
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|||||| |||||| |||| ||||||||| |||||||||||||||| ||| |||| ||||||||||||| ||| |||||||| |||||| | |||| ||| |
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| T |
22601395 |
tatgaatgaggaagcccaagttaagcttgcatctttcacctatgtcagatgctttcgtgtggctttgaccaagcgtcgtaatttattactatgagtacta |
22601296 |
T |
|
| Q |
220 |
ataggtgaactaaatatcaaaggtgtcttctcaggtggatccaaattctgaacctgaagaagctggaacaagaaggggaagaaggaaa |
307 |
Q |
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|||||||||||||| |||||||||| ||| || ||||||||| ||||||||||||||| | ||||||||| ||||||||| ||||||| |
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| T |
22601295 |
ataggtgaactaaaaatcaaaggtgacttttctggtggatccgaattctgaacctgaataggctggaacaggaaggggaaaaaggaaa |
22601208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 22604769 - 22604669
Alignment:
| Q |
13 |
aatatttccccacaatatggnnnnnnnttatcaaccattacaatggaagcccaagttaagctatcaggttcggtataaagttattttattcaagggcata |
112 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
22604769 |
aatatttccccacaatatggaaaaaaattatcaaccattacaatggaagcccaagttaagctatcaggttccatataaagttattttattcaagtgcata |
22604670 |
T |
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| Q |
113 |
t |
113 |
Q |
| |
|
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| T |
22604669 |
t |
22604669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 1742404 - 1742308
Alignment:
| Q |
210 |
aagagtgctaataggtgaactaaatatcaaaggtgtcttctcaggtggatccaaattctgaacctgaagaagctggaacaagaaggggaagaaggaaa |
307 |
Q |
| |
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||||||||||||||||||||| | ||| || ||| || ||| ||||||||||||||||||||||| ||| ||| | |||||| |||||||||||||| |
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| T |
1742404 |
aagagtgctaataggtgaactgca-atcgaaagtggctgctctggtggatccaaattctgaacctggagaggctcggacaagacggggaagaaggaaa |
1742308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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