View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6979_low_7 (Length: 320)
Name: NF6979_low_7
Description: NF6979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6979_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 28507202 - 28506896
Alignment:
| Q |
1 |
gaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcag |
100 |
Q |
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| T |
28507202 |
gaggcagttcaacatgagaagccacttgtgttgttgacgtatctttcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcag |
28507103 |
T |
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| Q |
101 |
tgcctagagatgagagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaa |
200 |
Q |
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| T |
28507102 |
tgcctagagatgagagagatgggtctttcacaagtgattcggttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaa |
28507003 |
T |
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| Q |
201 |
tattaagaacatgaaggacttgtttgtcaatatggaaagacaagataaatatgttaatgacttgttgagccacctgacaagtcttttgaaacactgattg |
300 |
Q |
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| T |
28507002 |
tattaagaacatgaaggacttgtttgtcaatattgaaagacaagataaatatgttaataacttgttgagccaccttacaagtcttttgaaacactgattg |
28506903 |
T |
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| Q |
301 |
tgatgtc |
307 |
Q |
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||||||| |
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| T |
28506902 |
tgatgtc |
28506896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 28494643 - 28494401
Alignment:
| Q |
14 |
atgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctagagatga |
113 |
Q |
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| T |
28494643 |
atgagaagccacttgtgttgttaacgtgtcttgcagatcaaggaataaatgcaagaatgttggaagaaaagaagatgggatactcagtgcctagagatga |
28494544 |
T |
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| Q |
114 |
gagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaatattaagaacatg |
213 |
Q |
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| T |
28494543 |
gagagatgggtctttcacaagtgatatggtggctcactcgattaggttagttatggttgaagaagagggaaggatctatagggataatattaagaacatg |
28494444 |
T |
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| Q |
214 |
aaggacttgtttgtcaatatggaaagacaagataaatatgtta |
256 |
Q |
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| T |
28494443 |
aaggatttgtttgtcaatcctgaaagacaagatagatatgtta |
28494401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 28491331 - 28491086
Alignment:
| Q |
7 |
gttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgccta |
106 |
Q |
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| T |
28491331 |
gttcaaaacgagaagccacttgtgttgatgacatttcttgtagaccagggaataaatgcgaaggtgttggaagaaaagaagatggcatacacggtgccta |
28491232 |
T |
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| Q |
107 |
gagatgagagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtggttgaagaagagggaatgatctatagagaaaatattaa |
206 |
Q |
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| T |
28491231 |
gagatgagcaagatgggtcattcacaagtgactcagtggctcgcacaattagactagttatgcttgaagaagaagggaggatatatagggaaaatattaa |
28491132 |
T |
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| Q |
207 |
gaacatgaaggacttgtttgtcaatatggaaagacaagataaatat |
252 |
Q |
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| T |
28491131 |
agaggtgaaggacttgtttgtcaatattgaaagacaagatagatat |
28491086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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