View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_high_10 (Length: 239)
Name: NF6980_high_10
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 4496176 - 4495970
Alignment:
| Q |
19 |
atagtactcaaaaaattatctgagccttccaagttgacatttcaattaagatacttaaattgctggttaatactaacagcatgaccattctcacaaactc |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4496176 |
atagtactcaaaaaattatccgagccttccaagttgacatttcaattaagatacttaaattgctggttaatactaacagcatgaccattctcacaaactc |
4496077 |
T |
|
| Q |
119 |
actaacattcca--nnnnnnnnccatccttagcattattccactgtggaattatgattatgaccattgacctttccctttaccatgcatataaatgtgtg |
216 |
Q |
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|||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4496076 |
actaacattccattttttttttccatccttagcattattcaactatggaattgtgattatgaccattgacctttccctttaccatgcatataaatgtgtg |
4495977 |
T |
|
| Q |
217 |
tattcat |
223 |
Q |
| |
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||||||| |
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| T |
4495976 |
tattcat |
4495970 |
T |
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