View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_high_11 (Length: 238)
Name: NF6980_high_11
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 23093655 - 23093449
Alignment:
| Q |
19 |
acacgatttttctataattacttgcaggcagttgaggttttatggaccccacaagatgaaaatgatactctctcagaacgggagttacttgaagattacc |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23093655 |
acacgatttttctataactacttgcaggcagttgaggttttatggaccccacaagatgaaaatgatactctctcagaacgggagttacttgaagattacc |
23093556 |
T |
|
| Q |
119 |
cacttttgcagcctttgtaaattgtaatggcatgcttgttttctgcttccgtgcttgtttttatgtcatctaagttagttcaaccacaaat-ttttctaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23093555 |
cacttttgcagcctttgtaaattgtaatggcatgcttgttttctgcttccgtgcttgtttttatgtcatctaagttagttcaaccacaaattttttctaa |
23093456 |
T |
|
| Q |
218 |
cattact |
224 |
Q |
| |
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||||||| |
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| T |
23093455 |
cattact |
23093449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 11825775 - 11825634
Alignment:
| Q |
19 |
acacgatttttctataattacttgcaggcagttgaggttttatggaccccacaagatgaaaatgatactctctcagaacgggagttacttgaagattacc |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11825775 |
acacgatttttctataattacttgcaggcagttgaggtgttatggaccccacaagatgaaaatgatactctcttggaacgggagttacttgaagattacc |
11825676 |
T |
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| Q |
119 |
cacttttgcagcctttgtaaattgtaatggcatgcttgtttt |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11825675 |
cacttttgcagcctttgtaaattgtaatggcatgcttgtttt |
11825634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 11825643 - 11825599
Alignment:
| Q |
170 |
tgcttgtttttatgtcatct-aagttagttcaaccacaaattttt |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11825643 |
tgcttgtttttatgtcatcttaagttagttcaaccacaaattttt |
11825599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 47348520 - 47348648
Alignment:
| Q |
40 |
ttgcaggcagttgaggttttatggaccccacaagatgaaaatgatactctctcagaacgggagttacttgaagattacccacttttgcagcctttgtaaa |
139 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47348520 |
ttgcaggcagttgaggtgttatggaccccacaaaatgaaaatgatactctctcggaacgggagttacttgaagattacccacttttgcggcctttgtaaa |
47348619 |
T |
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| Q |
140 |
ttgtaatggcatgcttgttttctgcttcc |
168 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
47348620 |
ttgtaatggaatgcttgttttctgcttcc |
47348648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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