View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6980_high_13 (Length: 226)

Name: NF6980_high_13
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6980_high_13
NF6980_high_13
[»] chr5 (3 HSPs)
chr5 (13-84)||(15592640-15592711)
chr5 (152-210)||(15592779-15592837)
chr5 (152-210)||(15682056-15682114)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 15592640 - 15592711
Alignment:
Q  13 gagaagaaagtagcatgatgatattgataagcaagaaaatagaagatatcacccttggaagctaagctaggg 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15592640 gagaagaaagtagcatgatgatattgataagcaagaaaatagaagatatcacccttggaagctaagctaggg 15592711  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 15592779 - 15592837
Alignment:
Q  152 gtaattgttttggtattgaccttattagagatggatgatggctttggtgcggttggtgg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15592779 gtaattgttttggtattgaccttattagagatggatgatggctttggtgcggttggtgg 15592837  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 15682114 - 15682056
Alignment:
Q  152 gtaattgttttggtattgaccttattagagatggatgatggctttggtgcggttggtgg 210  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||||||||||||||    
T  15682114 gtaattgttttggtgctgaccttattagatattgatgatggctttggtgcggttggtgg 15682056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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