View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_high_5 (Length: 358)
Name: NF6980_high_5
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 55722240 - 55721885
Alignment:
| Q |
1 |
acttagaacttaaacatgtggtttgtaactcgatgtcatatcgtcgacgtgtacgaaaaaacttatacttgtgaacattgcatttcaaactatgata--- |
97 |
Q |
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| T |
55722240 |
acttagaacttaaacatgtggtttgtaactcgatgtcatatcgtcgacgtgtacgaaaaaacttatacttgtgaacattgcatttcaaactatgataaat |
55722141 |
T |
|
| Q |
98 |
-tgacgttaatgagtctcttgtttt-atcaactgtgagaaagcaaaacatatatgggatgttactggttttcggagtacaataaatcatcgatgtatcgt |
195 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55722140 |
atgacattaatgagtctcttgtttttatcaactgtgagaaagcaaaacatatatgggatgttactggttttcggagtacaataaatcatcgatgtatcgt |
55722041 |
T |
|
| Q |
196 |
gctgacagttttgttgagctttcagtccaggttctgcaaacactttctaaccgcatcatgtttgaatttgttacaatatagtgtcaatagaggcgacata |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55722040 |
gctgacagttttgttgagctttcagtccaggttctgcaaacactttctaactgaatcatgtttgaatttgttacaatatagtgtcaatagaggcgacata |
55721941 |
T |
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| Q |
296 |
atgagtaataaataagagaaaaagacttttatacgacgaacacatgatattcttcg |
351 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55721940 |
atgagtcataaataagagaaaaagacttttatacgacgaacacatgatatgcttcg |
55721885 |
T |
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