View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_high_7 (Length: 346)
Name: NF6980_high_7
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 55722349 - 55722016
Alignment:
| Q |
18 |
tcttaaagggtcttggcttgtccctttagaaaaattatgccaatatgatcattttctaacgatattttaaataaaaatgatctaacatgatatgattcaa |
117 |
Q |
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| T |
55722349 |
tcttaaagggtcttggcttgtccctttagaaaaattatgccaatatgatcattttctaacgatattttaaataaaaatgatctaacatgatatgattcaa |
55722250 |
T |
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| Q |
118 |
gttatagatacttagaacttaaacatgtggtttgtaactcgatgtcatatcgtcgacgtgtacgaaaaaacttatacttgtgaacattgcatttcaaact |
217 |
Q |
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| T |
55722249 |
gttatagatacttagaacttaaacatgtggtttgtaactcgatgtcatatcgtcgacgtgtacgaaaaaacttatacttgtgaacattgcatttcaaact |
55722150 |
T |
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| Q |
218 |
atg----atatgacgttaatgagtctcttg-ttttatcaactgtgagaaagcaaaacatatatgggatgttactggttttcggagtacaataaatcatcg |
312 |
Q |
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| T |
55722149 |
atgataaatatgacattaatgagtctcttgtttttatcaactgtgagaaagcaaaacatatatgggatgttactggttttcggagtacaataaatcatcg |
55722050 |
T |
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| Q |
313 |
atgtatcgtgctgacagttttgttgagctttcag |
346 |
Q |
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| T |
55722049 |
atgtatcgtgctgacagttttgttgagctttcag |
55722016 |
T |
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