View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_high_9 (Length: 247)
Name: NF6980_high_9
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 15556978 - 15556904
Alignment:
| Q |
173 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaac |
247 |
Q |
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| T |
15556978 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaac |
15556904 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 46506253 - 46506325
Alignment:
| Q |
115 |
tgtgaactcccccagaggtatgtttcaaaataagttctagaatcttttccctgtttgctttaaattttcaagc |
187 |
Q |
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| T |
46506253 |
tgtgaactcctccagaggcatgtttcaaagtaagttctacaatgttttccctctttgcttataattttcaagc |
46506325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 5157726 - 5157654
Alignment:
| Q |
24 |
gtgagctcagatatgtttatacaa---gaaaatgtgaggtacat-agatacagctcatgaagttagattgtag |
92 |
Q |
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| T |
5157726 |
gtgagctcagatatgtttataatataggaaaatgcgagggacattagatacagctcatgaagttggattgtag |
5157654 |
T |
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