View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6980_low_1 (Length: 751)
Name: NF6980_low_1
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 691; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 20 - 734
Target Start/End: Complemental strand, 44927198 - 44926484
Alignment:
| Q |
20 |
cttactacaaaatttaaccaaatctaggtttaacagaaacattttttattcttgtgaaaacctaactaatcactaaaaatgatgaagataatgaatggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44927198 |
cttactacaaaatttaaccaaatctaggtttaacagaaacattttttattcttgtgaaaacctaactaatcactaaaaatgatgaagataatgaatggtt |
44927099 |
T |
|
| Q |
120 |
gtccttgttcaaatgttgcaattgagcagaagcaacatatgatcatggttcatgagaaatgtgtgattttattctacctgcgctggaaccgtcttataat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44927098 |
gtccttgttcaaatgttgcaattgagcagaagcaacatatgatcatggttcatgagaaatatgtgattttattctacctgcgctggaagcgtcttataat |
44926999 |
T |
|
| Q |
220 |
tgcttcatcaaggccaaatggcatgttggttgcagcaagaacagtaactttctcgacaggttttgacaatagtccatcccagtgggacatgaattcattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44926998 |
tgcttcatcaaggccaaatggcatgttggttgcagcaagaacagtaactttctcgacaggttttgacaatagtccatcccagtgggacatgaattcattt |
44926899 |
T |
|
| Q |
320 |
ttaatccttgtcattgtcttgtcatcattgttagaccgcttcccaagcaagctatcaacttcatcaatgaaaataatagttggggaaacctttgctgcta |
419 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44926898 |
ttaatccttctcattgtcttgtcatcattgtcagaccgcttcccaagcaagctatcaacttcatcaatgaaaataatagttggggaaacctttgctgcta |
44926799 |
T |
|
| Q |
420 |
gtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44926798 |
gtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgc |
44926699 |
T |
|
| Q |
520 |
aattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44926698 |
aattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggt |
44926599 |
T |
|
| Q |
620 |
cttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagataa |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44926598 |
cttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttgcagagataa |
44926499 |
T |
|
| Q |
720 |
gctctcgtctgatgt |
734 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
44926498 |
gctctcgtcttatgt |
44926484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 68 - 729
Target Start/End: Complemental strand, 44935589 - 44934929
Alignment:
| Q |
68 |
ttcttgtgaaaacctaactaatcactaaaaatgatgaagataatgaatggttgtccttgttcaaatg-ttgcaattgagcagaagcaacatatgatcatg |
166 |
Q |
| |
|
||||| ||| |||||||| ||||||| || || ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
44935589 |
ttcttatgagaacctaaccaatcactgaatatcatgaaagtaatgaatgtttgtccttgttcaaatgattgcaattgagcagaagcaacagatgatcatg |
44935490 |
T |
|
| Q |
167 |
gttcatgagaaatgtgtgattttattctacctgcgctggaaccgtcttataattgcttcatcaaggccaaatggcatgttggttgcagcaagaacagtaa |
266 |
Q |
| |
|
|||| || ||||||||| || |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44935489 |
attcaggacaaatgtgtggtt-----ctacctgcgctgaaaccgtctgataattgcttcatcaaggtcaaatggcatgttggttgcagcaagaacagtaa |
44935395 |
T |
|
| Q |
267 |
ctttctcgacaggttttgacaatagtccatcccagtgggacatgaattcatttttaatccttgtcattgtcttgtcatcat---tgttagaccgcttccc |
363 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||| ||| ||| || ||||||| | ||| |
|
|
| T |
44935394 |
ttttctcatcaggttttgacaatagtccatcccaacgggacatgaattcatttttgacccttctcattgagctgtgctcacgagtgctagaccgttgccc |
44935295 |
T |
|
| Q |
364 |
aagcaagctatcaacttcatcaatgaaaataatagttggggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaa |
463 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| | |||||| || || || ||||| | ||||||||||||||||||| | ||| ||| |
|
|
| T |
44935294 |
aagcatgctatcaacttcgtcaatgaaaataatagttggagcaaccttcgccgcaagcgaaaatagagctcggacgttcttttcagattgtccttgcca- |
44935196 |
T |
|
| Q |
464 |
cat-gaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtcca |
562 |
Q |
| |
|
||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
44935195 |
catcgaagtgatggtggatggagagacattgatgaaacttgctccagcttcatttgcaattgccttggcaagcattgtctttcctgtaccaggaggtcca |
44935096 |
T |
|
| Q |
563 |
aaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaa |
662 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44935095 |
aaaagcaatacacctttacatggcttcagaaccccatcacctttgaatagatctggtcttctaaggggaagcataaccgcttcttgaagtgattctttaa |
44934996 |
T |
|
| Q |
663 |
cgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagataagctctcgtct |
729 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||| |||| |
|
|
| T |
44934995 |
catcatccaaagcaccaatatctgaaaaagtcacctttatctcgtttgcagggataagctcttgtct |
44934929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 26 - 729
Target Start/End: Complemental strand, 45989017 - 45988315
Alignment:
| Q |
26 |
acaaaatttaaccaaatctaggtttaacagaaacattttttattcttgtgaaaacctaactaatcactaaaaatgatgaagataatgaatggttgtcctt |
125 |
Q |
| |
|
||||||||| || |||||| ||||| ||||||| ||||| ||||| ||| |||||||||||||| | || ||| ||||||||||||||| |||||||| |
|
|
| T |
45989017 |
acaaaattttacgtaatctatgtttatcagaaacttttttgtttcttatgataacctaactaatcaatgaagatggtgaagataatgaatgcttgtcctt |
45988918 |
T |
|
| Q |
126 |
gttcaaatg-ttgcaattgagcagaagcaacatatgatcatggttcatgagaaatgtgtgattttattctacctgcgctggaaccgtcttataattgctt |
224 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||| |||| |||||| ||||||||| || |||||| ||||| ||||||||||||| ||||| |
|
|
| T |
45988917 |
gttcaaatgattgcaattgagtagaagcaacaggtgaacatgattcatggcaaatgtgtggtt-----ctaccttcgctgaaaccgtcttataactgctt |
45988823 |
T |
|
| Q |
225 |
catcaaggccaaatggcatgttggttgcagcaagaacagtaactttctcgacaggttttgacaatagtccatcccagtgggacatgaattcatttttaat |
324 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||| | |||||||| || ||||| | |
|
|
| T |
45988822 |
catcaaggtcaaatggcatgttggtggcagcaagaacaataattttctcatcaggttttgacaatagtccatcccaacgtgacatgaactcgtttttcac |
45988723 |
T |
|
| Q |
325 |
ccttgtcattgtcttgtcatcatt---gttagaccgcttcccaagcaagctatcaacttcatcaatgaaaataatagttggggaaacctttgctgctagt |
421 |
Q |
| |
|
|||| | |||| |||| |||| | |||||||| |||||||| |||||| |||||||| ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
45988722 |
ccttcttattgagttgttttcataagagctagaccgccgcccaagcatgctatccacttcatcgatgaaaataatagttggggcaacctctgctgctagt |
45988623 |
T |
|
| Q |
422 |
gaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgcaa |
521 |
Q |
| |
|
||||||| ||||||||||||||||||| | | ||| |||| |||| ||| ||||| | |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
45988622 |
gaaaacagagctcggacgttcttttcagcttgtccggaccactttgaattgatggtggacggagagacattgatgaaacttgctccagattcattagcaa |
45988523 |
T |
|
| Q |
522 |
ttgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggtct |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| || |||||| |
|
|
| T |
45988522 |
ttgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggcttcagaagcccatcgcctttgaatagatatggtct |
45988423 |
T |
|
| Q |
622 |
tctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagataagc |
721 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||| || ||||||| |
|
|
| T |
45988422 |
tctaaggggaagcataaccgcttcttgaagtgattctttaatatcatccaaagcaccaatatctgaaaaagtcacttctatctcatttgcagggataagc |
45988323 |
T |
|
| Q |
722 |
tctcgtct |
729 |
Q |
| |
|
||| |||| |
|
|
| T |
45988322 |
tcttgtct |
45988315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 45993871 - 45993622
Alignment:
| Q |
68 |
ttcttgtgaaaacctaactaatcactaaaaatgatgaagataatgaatggttgtccttgttcaaatg-ttgcaattgagcagaagcaacatatgatcatg |
166 |
Q |
| |
|
||||||||| ||||||| ||||| | || |||||||| ||||| |||| | ||||||||||||||| ||||||| | |||||||||||| |||| |||| |
|
|
| T |
45993871 |
ttcttgtgaggacctaacaaatcaatgaagatgatgaacataataaatgctggtccttgttcaaatgattgcaatcgggcagaagcaacagatgaacatg |
45993772 |
T |
|
| Q |
167 |
gttcatgagaaatgtgtgattttattctacctgcgctggaaccgtcttataattgcttcatcaaggccaaatggcatgttggttgcagcaagaacagtaa |
266 |
Q |
| |
|
||||||| ||| |||| || |||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||| || |||||||||| | ||| |
|
|
| T |
45993771 |
attcatgacaaacatgtggtt-----ctaccttcgctgaaaccgtcttataactgcttcatcaaggtcaaatggcatgttcgtagcagcaagaataataa |
45993677 |
T |
|
| Q |
267 |
ctttctcgacaggttttgacaatagtccatcccagtgggacatgaattcattttt |
321 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
45993676 |
ttttctcatccggttttgacaatagtccatcccatcgtgacatgaattcattttt |
45993622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 572
Target Start/End: Original strand, 39716201 - 39716282
Alignment:
| Q |
491 |
ttgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaata |
572 |
Q |
| |
|
||||||||| |||||||||||||| |||| | |||||||| |||||||| ||||| || ||||| || || ||||| |||| |
|
|
| T |
39716201 |
ttgatgaaatttgctccagcttcagttgctacagcctttgcaagcattgtttttcccgtgccagggggaccgaaaagcaata |
39716282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 365 - 719
Target Start/End: Original strand, 11094520 - 11094871
Alignment:
| Q |
365 |
agcaagctatcaacttcatcaatgaaaataatagttggggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaac |
464 |
Q |
| |
|
|||| ||| ||||||||||| | ||| |||||||| || | |||||| |||||||| | |||||||||||||| ||||||||| | | ||| ||||| |
|
|
| T |
11094520 |
agcatgctgtcaacttcatcgacgaatataatagtcggagcaaccttagctgctagcgtgaacaaagctcggacattcttttcatcttctccgaaccatt |
11094619 |
T |
|
| Q |
465 |
atgaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaa |
564 |
Q |
| |
|
||||| ||| ||||| ||||| || |||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| || || || |
|
|
| T |
11094620 |
ttgaagtgatcgtggacatcgagacgttaatgaaacttgctcctgcttcattcgcaatcgcctttgctagcattgtttttccggtaccaggtggaccgaa |
11094719 |
T |
|
| Q |
565 |
aagtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacg |
664 |
Q |
| |
|
|||||||| |||| |||||||||| |||| ||| |||||||| | ||||||||||||||||||||||| ||| |||||||| |||||||| | |
|
|
| T |
11094720 |
aagtaatatacctctacatggctttagaagtcca---cctttgaaaaggtctggtcttctaaggggaagcattactagctcttgaagcgattcttttatc |
11094816 |
T |
|
| Q |
665 |
tcatccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagataa |
719 |
Q |
| |
|
||||| |||||||| ||||||| || || || |||||||| |||| || ||||| |
|
|
| T |
11094817 |
tcatctaatgcaccgatatctgcgaatgtaacacctatctcatttgcagggataa |
11094871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 194 - 325
Target Start/End: Original strand, 11094346 - 11094477
Alignment:
| Q |
194 |
tacctgcgctggaaccgtcttataattgcttcatcaaggccaaatggcatgttggttgcagcaagaacagtaactttctcgacaggttttgacaatagtc |
293 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||| || || || |||| ||| | ||||| |
|
|
| T |
11094346 |
tacctgcgctcaaaccgtcgtataattgcttcatcaagatcaaatggtctgttggtagcagcaagaacaagaatttgttcattaggtcctgatagtagtc |
11094445 |
T |
|
| Q |
294 |
catcccagtgggacatgaattcatttttaatc |
325 |
Q |
| |
|
||||||| || | ||||||||||||||||||| |
|
|
| T |
11094446 |
catcccaatgtgtcatgaattcatttttaatc |
11094477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 622 - 697
Target Start/End: Complemental strand, 32199839 - 32199764
Alignment:
| Q |
622 |
tctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacc |
697 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| || |||| ||||||| ||||| ||||||||||||| |
|
|
| T |
32199839 |
tctaaggggaagtataaccgcttcttgaagtgattctttgacatcatttaatgcactaatatatgaaaaagtcacc |
32199764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 593
Target Start/End: Complemental strand, 2489742 - 2489637
Alignment:
| Q |
488 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggct |
587 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||| || ||||| || |||| ||| |||| |||| |
|
|
| T |
2489742 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
2489643 |
T |
|
| Q |
588 |
tcagaa |
593 |
Q |
| |
|
| |||| |
|
|
| T |
2489642 |
ttagaa |
2489637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 564
Target Start/End: Original strand, 41591244 - 41591320
Alignment:
| Q |
488 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaa |
564 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||| || |||||||| || || || |||||||| ||||| |
|
|
| T |
41591244 |
acattaatgaaacttgctccagcttcctttgcaatggccttcgccagcattgttttcccagttccaggaggcccaaa |
41591320 |
T |
|
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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 37554317 - 37554240
Alignment:
| Q |
372 |
tatcaacttcatcaatgaaaataatagttggggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcac |
449 |
Q |
| |
|
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|
|
| T |
37554317 |
tatcaacttcaacaataaaaataattgttggggccaactttgtcgctaataaaaacagagctcgaacgttcttttcac |
37554240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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