View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6980_low_13 (Length: 228)
Name: NF6980_low_13
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 10728574 - 10728509
Alignment:
| Q |
72 |
ttgagtgttcatcatgatttttgctataagcatcaaataagttgtttatccaaattgggtcttaat |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10728574 |
ttgagtgttcatcatgatttttgctataagcatcaaataagttgtttatccaaattgggtcttaat |
10728509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 10729139 - 10729091
Alignment:
| Q |
19 |
ttaatatcatatcaaaagggtgtttcataatgtatcatatcatatcaaa |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10729139 |
ttaatatcatatcaaaagggtgtttcataatgtaccatatcatatcaaa |
10729091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 10728445 - 10728407
Alignment:
| Q |
181 |
tagcactgctcttatgagctaaataagttcatttcagtc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10728445 |
tagcactgctcttatgagctaaataagttgatttcagtc |
10728407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University