View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_low_4 (Length: 442)
Name: NF6980_low_4
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 423
Target Start/End: Original strand, 48703797 - 48704211
Alignment:
| Q |
9 |
cagaacctgtgaaggctgcagaggaggctcatcaaatcttgctggattggtttgttaaatatgttaagtgagaaatcttattggatgaagagctcctaga |
108 |
Q |
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| T |
48703797 |
cagaagctgtgaaggctgcagaggaggctcatcaaatcttgctggattggtttgttaaatatgttaagtgagaaatcttgttggatgaagagctcctaga |
48703896 |
T |
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| Q |
109 |
gtggagggtgtaaaaatctcactcattcgacgctgttattgtttacaacaaaataaatgtgatatgagaacataacatatcttatattaaggattcatat |
208 |
Q |
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| T |
48703897 |
gtggaggatgtaaaaatctcactcattcgacgctgttattgtttacaacaaaataaatgtgatatgagaacataacatatcttatattaaggattcatat |
48703996 |
T |
|
| Q |
209 |
gttacaatttgatttctttgtattctgaattatttagtatctcaaaaaagcaatatttgttcttttccaatggaaattttttggtctagtttgggttaat |
308 |
Q |
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| T |
48703997 |
gttacaatttgatttctttgtattctgaattatttagtatctcaaaaaagcaatatttgttcttttccaatggaaattttttggtctagtttgggttaat |
48704096 |
T |
|
| Q |
309 |
atctagcttatagaagcgcctcaattgaaataaatttatactggctccaaactccatctaacaatataataagtccctttaacaaatgacatttatcaac |
408 |
Q |
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| T |
48704097 |
atctagcttatagaagcgcctcaattgaaataaatttatactggctccaaactccatctaacaatataataagtccctttaacagatgacatttatcaac |
48704196 |
T |
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| Q |
409 |
atagtatcacactat |
423 |
Q |
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| T |
48704197 |
atagtatcatactat |
48704211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 48716519 - 48716748
Alignment:
| Q |
9 |
cagaacctgtgaaggctgcagaggaggctcatcaaatcttgctggattggtttgttaaatatgttaagtgagaaatcttattggatgaagagctcctaga |
108 |
Q |
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||||| ||||||||||| |||||||||| | ||| |||||| |||||||||||| |||| || |||||||||||||||| ||||||||||| |||||||| |
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| T |
48716519 |
cagaagctgtgaaggcttcagaggaggcacgtcagatcttgttggattggtttgataaacatcttaagtgagaaatcttgttggatgaagaactcctaga |
48716618 |
T |
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| Q |
109 |
gtggagggtgtaaaaatctcactcattcgacgctgttattgtttacaacaaaataaatgtgatatgagaacataacatatcttatattaaggattcatat |
208 |
Q |
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| T |
48716619 |
gtggaggatgtaaacatgtcactcattccatgcttttattatttacagcaaaataaatgtgatatgaaatcttaa-aggtc-tattttaaggattcattt |
48716716 |
T |
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| Q |
209 |
gttacaatttgatttctttgtattctgaattat |
241 |
Q |
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| T |
48716717 |
gttgcaatttgatttc-atgtattctgaattat |
48716748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 48689929 - 48690005
Alignment:
| Q |
8 |
gcagaacctgtgaaggctgcagaggaggctcatcaaatcttgctggattggtttgttaaatatgttaagtgagaaat |
84 |
Q |
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|||||| ||||||| |||||||||||||| ||||| ||| ||||| ||||||| |||| || | ||||||||||| |
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| T |
48689929 |
gcagaagctgtgaaagctgcagaggaggcacatcaggacttactggactggtttgctaaacatctcaagtgagaaat |
48690005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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