View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_low_5 (Length: 372)
Name: NF6980_low_5
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 24 - 357
Target Start/End: Complemental strand, 28159751 - 28159398
Alignment:
| Q |
24 |
tacatactaaacatgtaagaaaattccaatttcactataaaaaatatcaaaaagtcacattgaaataatctcagattctatgcaatcaattatgaacctg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28159751 |
tacatactaaacatgtaagaaaattccaatttcactataaaaaatatcaaaa-gtcacattgaaataatctcagatactatgcaatcaattatgaacctg |
28159653 |
T |
|
| Q |
124 |
gtaagagattaaagtatgaaacacacaacaacaaaaatcaaagaagaaaacaaattgggcagagtttttccaat---------------------tgaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
28159652 |
gtaagagattaaagtatgaaacacacaacaacaaaaatcaaagaagaaaacaaattgggcagagttttaccaattgtactatgtgcttgcaaacctgaac |
28159553 |
T |
|
| Q |
203 |
ttccttctcttcattttaatcacaagcctctgaactttagtgtacagctgaatccattattaaaatattataaatggaactcagcttcatttttctgaac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159552 |
ttccttctcttcattttaatcacaagcctctgaactttattgtacagctgaatccattattaaaatattataaatggaactcagcttcatttttctgaac |
28159453 |
T |
|
| Q |
303 |
aagaatggaacttagcttcttcactgaaatatataaatatttgaaagttttaaat |
357 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
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| T |
28159452 |
aagaatggaactcagcttcttaactgaactatataaatatttgaaagttttaaat |
28159398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 357
Target Start/End: Original strand, 14358638 - 14358991
Alignment:
| Q |
24 |
tacatactaaacatgtaagaaaattccaatttcactataaaaaatatcaaaaagtcacattgaaataatctcagattctatgcaatcaattatgaacctg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14358638 |
tacatactaaacatgtaagaaaattccaatttcactataaaaaatatcaaaa-gtcacattgaaataatctcagataacatgcaatcaattatgaacctg |
14358736 |
T |
|
| Q |
124 |
gtaagagattaaagtatgaaacacacaacaacaaaaatcaaagaagaaaacaaattgggcagagtttttccaat---------------------tgaac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
14358737 |
gtaagagattaaagtatgaaacacacaacaacaaaaatcaaagaagaaaacaaattggatagagttttaccaattgtactatgtgcttgaaaacctgaac |
14358836 |
T |
|
| Q |
203 |
ttccttctcttcattttaatcacaagcctctgaactttagtgtacagctgaatccattattaaaatattataaatggaactcagcttcatttttctgaac |
302 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14358837 |
ttccttctcttcattttaatcacaagcatctgaactttagtgtacagctgaatccattattaaaatattataaatggaactcggcttcatttttctgaac |
14358936 |
T |
|
| Q |
303 |
aagaatggaacttagcttcttcactgaaatatataaatatttgaaagttttaaat |
357 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
14358937 |
aagaatggaactcagcttcttaactgaaatatataaatatttgaaagttttaaat |
14358991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 38286053 - 38285897
Alignment:
| Q |
24 |
tacatactaaacatgtaagaaaattccaatttcactataaaaaatatcaaaaagtcacattgaaataatctcagattctatgcaatcaattatgaacctg |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||| ||||||||||||| |
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| T |
38286053 |
tacatattaaacatgtaagaaaattccaatttcactataaaaaatatcaaaa-gtcacattcaaataatctcagatactatacaattaattatgaacctg |
38285955 |
T |
|
| Q |
124 |
gtaagagattaaagtatgaaacacacaacaacaaaaatcaaagaagaaaacaaattgg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38285954 |
gtaagagattaaagtatgaaacacacaacaacaaaaatcaaagaagaaaacaaattgg |
38285897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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