View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_low_7 (Length: 348)
Name: NF6980_low_7
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 47347557 - 47347793
Alignment:
| Q |
17 |
tcagatattagtacaagttaacctgttctatgcatgaaactagacatacagttaatcattttaggcacctcttactggttcaatatccaggtttatatcc |
116 |
Q |
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| T |
47347557 |
tcagatattagtacaagttaatctgctctaggcaagaaactagacatgcaattaatcattttaggcacctcttaccggttcaacatccaggtttatatcc |
47347656 |
T |
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| Q |
117 |
ctattgacatcaatatctaaaacagaatgtttttgtatccgaaagaaaaataatctataaaagatatggataatgtttggtcttcgatgtcgtgatgtaa |
216 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
47347657 |
ctattgacatcaatatctaaaaaagaatgtttttctatccaaaagaaaaataatctataaaagatatggataatgtttggtcgatgatgtcttgatgtaa |
47347756 |
T |
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| Q |
217 |
gcattatgcttccagcctaatgcattccactgagaat |
253 |
Q |
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| T |
47347757 |
gcattatgcttccagcctaatgcattccactgagaat |
47347793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 47348304 - 47348379
Alignment:
| Q |
273 |
ttctaaactttgttgttcttatatattagataacaatcttggccgttgctgaaggagaacataaacttcctagcat |
348 |
Q |
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| T |
47348304 |
ttctaaactttgtttttcttatatatcagataacaatcttggctgctgctgaaggagaacataaacttcctggcat |
47348379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 11826403 - 11826247
Alignment:
| Q |
16 |
atcagatattagtacaagttaacctgttctatgcatgaaactagacatacagttaatcattttaggcacctcttactggttcaatatccaggtttatatc |
115 |
Q |
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| T |
11826403 |
atcagatattagtacaagttaacctgttctaggcatgaaactagacatacagttaatcattttaggcacctcttaccggttcaatatccaggtttatatc |
11826304 |
T |
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| Q |
116 |
cctattgacatcaatatctaaaacagaatgtttttgtatccgaaagaaaaataatct |
172 |
Q |
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| T |
11826303 |
cctattgacatcaatatctaaaacagaatgtttttctatccaaaagaaaaataatct |
11826247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 23094327 - 23094187
Alignment:
| Q |
16 |
atcagatattagtacaagttaacctgttctatgcatgaaactagacatacagttaatcattttaggcacctcttactggttcaatatccaggtttatatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23094327 |
atcagatattagtacaagttaacctgttctatgcatgaaactagacatacagttaatcattttaggcacctcttactggttcaatatccaggtttatatc |
23094228 |
T |
|
| Q |
116 |
cctattgacatcaatatctaaaacagaatgtttttgtatcc |
156 |
Q |
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| T |
23094227 |
cctattcacatcaatatctaaaacagaatgtgtttctatcc |
23094187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 11825984 - 11825899
Alignment:
| Q |
263 |
ttcacctatcttctaaactttgttgttcttatatattagataacaatcttggccgttgctgaaggagaacataaacttcctagcat |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11825984 |
ttcacctatcttctaaactttgttgttcttatatatcagataacaatcttggccgctgctgaaggagaacataaacttcctagcat |
11825899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 23093865 - 23093778
Alignment:
| Q |
263 |
ttcacctatcttctaaactttgttgttcttatatatt--agataacaatcttggccgttgctgaaggagaacataaacttcctagcat |
348 |
Q |
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| T |
23093865 |
ttcacctatcttctaaactttgttgttcttatatatatcagataacaatcttggccgctgctgaaggagaacataaacttcctagcat |
23093778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 1495474 - 1495504
Alignment:
| Q |
318 |
ttgctgaaggagaacataaacttcctagcat |
348 |
Q |
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| T |
1495474 |
ttgctgaaggagaacataaacttcctagcat |
1495504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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