View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6980_low_9 (Length: 308)
Name: NF6980_low_9
Description: NF6980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6980_low_9 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 279 - 563
Alignment:
| Q |
9 |
cagaacctgtgaagtagaagttagtagtgtttcataccgtgcatcaactttgcagcgcaacgcatactttatatcaccaaacaaatagttaacattcgag |
108 |
Q |
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| T |
279 |
cagaacctgagaagtagaagttagtactgtttcataccgtgcttcaagtttgcagcgcaacgcatactttatataaccaaacaaatagttaacattcgag |
378 |
T |
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| Q |
109 |
acagcatttttgagcctattcaaccatacatgtacgctaacagcatcatcattaggtacaacttcaaaactgagcagctctgtctggagcttttccaaat |
208 |
Q |
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| T |
379 |
acagcatttttgagcctgttcaaccatacatgtacgctaacagcatcatcattaggtacaacttcaaaattgagcagttctgtctggagcttttccaaga |
478 |
T |
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| Q |
209 |
gtgaattgtgaagcttcatcctcctgtagttgttcacgaacacgctagaaacaatcttgtttaagaacacttttacacaagttga |
293 |
Q |
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| T |
479 |
gtggaatgtcaagattcgtcttcctgtaggtgtccatgaactcactagaaacaatcttgtttaacaacactttcacacaagttga |
563 |
T |
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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 125 - 293
Target Start/End: Complemental strand, 17311171 - 17311003
Alignment:
| Q |
125 |
tattcaaccatacatgtacgctaacagcatcatcattaggtacaacttcaaaactgagcagctctgtctggagcttttccaaatgtgaattgtgaagctt |
224 |
Q |
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||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||| ||||||| ||| |||||||| | ||| | |||||| |
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| T |
17311171 |
tattcaaccatacattgacactaacagcatcatcgttaactacaacttcaaaactgagcagttctgtcttgagattttccaagagcgaaacatcaagctt |
17311072 |
T |
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| Q |
225 |
catcctcctgtagttgttcacgaacacgctagaaacaatcttgtttaagaacacttttacacaagttga |
293 |
Q |
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| T |
17311071 |
cgtcctcctgtagttgtccacgaactcactagaaacaatcttgtttaacatgactttgacgcaagttga |
17311003 |
T |
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