View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_high_10 (Length: 368)
Name: NF6981_high_10
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 47502430 - 47502807
Alignment:
| Q |
1 |
acagggcatgatcactggtcttgtttgcattacacctgccgcaggtacacacaatcataatgtc------------cccaatcttcactaatcaatacaa |
88 |
Q |
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| T |
47502430 |
acagggcatgatcactggtcttgtttgcattacacctgccgcaggtacacacaatcataatgtcacatactttgtccccaatcttcactaatcaatacaa |
47502529 |
T |
|
| Q |
89 |
atatagtacacaattttttgcacattcacggtcacaacaattctttaagttgaacttcattaatcttgaatttggagatgattaaccatggttttagctg |
188 |
Q |
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| T |
47502530 |
atatagtacacaattttttgcacattcacggtcacaacaattctttaagttgaacttcattaatcttgaatttggagatgattaaccatggttttagctg |
47502629 |
T |
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| Q |
189 |
tttaaatttatgtagttgaaag---attatgatcaccttcaatcttataacatcattggnnnnnnnnnnnnnnngt------gttacattcattaaatgg |
279 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
47502630 |
tttaaatttatgtagttgaaagattattatgatcaccttcaatcttataacatcattggaagaaaaaaaaaagtgttacataattacattcattaaatgg |
47502729 |
T |
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| Q |
280 |
cgagttgcaattaacatttgtcatggttgaataggagttgtgcaggggtgggcagcaatcttgatgggtttcatatca |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47502730 |
cgagttgcaattaacatttgtcatggttgaataggagttgtgcaggggtgggcagcaatcttgatgggtttcatatca |
47502807 |
T |
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