View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6981_high_17 (Length: 265)
Name: NF6981_high_17
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 15755665 - 15755901
Alignment:
| Q |
21 |
acagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaatttatacttatgg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15755665 |
acagttgcatccatgattgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagcatattcattttgctaccacaatttatacttatgg |
15755764 |
T |
|
| Q |
121 |
gagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcattaactac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
15755765 |
gagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatattccttaactac |
15755864 |
T |
|
| Q |
221 |
tactggaattggtagttttctcagcacctttcttctc |
257 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15755865 |
tactggaattggtagttttctcagcacttttcttctc |
15755901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 15766536 - 15766770
Alignment:
| Q |
23 |
agttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaatttatacttatggga |
122 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15766536 |
agttgcattcatgattgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagcatattcattttgcttccacaatttatacttatggga |
15766635 |
T |
|
| Q |
123 |
gtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcattaactacta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15766636 |
gtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagccttggaacatcatactcattaactacta |
15766735 |
T |
|
| Q |
223 |
ctggaattggtagttttctcagcacctttcttctc |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15766736 |
ctggaattggtagttttctcagcacttttcttctc |
15766770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 15779724 - 15779906
Alignment:
| Q |
75 |
gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
15779724 |
gttccattgagcatattcattttggctccacaatttgtacttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaag |
15779823 |
T |
|
| Q |
175 |
caccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctc |
257 |
Q |
| |
|
| ||||||||||||||||| ||||| | || || || ||||||||||| || ||||||||||| || ||||| ||||||||| |
|
|
| T |
15779824 |
ccccagaaagcatgaagagccttgggagttcgtattccttaactactacgggcattggtagtttccttagcacttttcttctc |
15779906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 15737625 - 15737749
Alignment:
| Q |
75 |
gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag |
174 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | |||||| ||| ||||| ||||| ||||||||||||| |
|
|
| T |
15737625 |
gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag |
15737724 |
T |
|
| Q |
175 |
caccagaaagcatgaagagtcttgg |
199 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
15737725 |
ctccagaaagcatgaagagtcttgg |
15737749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 15730021 - 15730140
Alignment:
| Q |
74 |
agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa |
173 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||| ||||||||||| ||||| ||| ||||||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
15730021 |
agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa |
15730120 |
T |
|
| Q |
174 |
gcaccagaaagcatgaagag |
193 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
15730121 |
gctccagaaagcatgaagag |
15730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
| Q |
73 |
aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca |
172 |
Q |
| |
|
||||||| ||||| || ||||||||||| || || ||||||||||||||| ||||| ||| || |||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
33411715 |
aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca |
33411616 |
T |
|
| Q |
173 |
agcaccagaaagcatgaagagtcttggaac |
202 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
33411615 |
agctccagaaagcatgaagagtattggaac |
33411586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
| Q |
153 |
atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
39256639 |
atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca |
39256586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
| Q |
156 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata |
208 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
39193647 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
39193595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
| Q |
156 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata |
208 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
39223000 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
39222948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
| Q |
153 |
atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
203 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
39238670 |
atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca |
39238620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
| Q |
162 |
ttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
39176920 |
ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca |
39176879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
| Q |
156 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac |
209 |
Q |
| |
|
|||||||| || |||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
39259888 |
gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac |
39259835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University