View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6981_high_19 (Length: 256)
Name: NF6981_high_19
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38223832 - 38224075
Alignment:
| Q |
1 |
ccatagttgtcccgtgttccagatacaaatctaggcacatttttggtactttactttcttcaatatgtaagtgttccagcatatactctgtaaacaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223832 |
ccatagttgtcccgtgttccagatacaaatctaggcacatttttggtactttactttcttcaatatgtaagtgttccagcatatactctgtaaacaaaac |
38223931 |
T |
|
| Q |
101 |
aagattgagaaaactatactagtaccnnnnnnnnngggtacaataaactatagtacttctattacataagcatataaaataatctgaacacatgaaaatt |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223932 |
aagattgagaaaacta---tagtaattttttttttgggtacaataaactatagtacttctattacataagcatataaaataatctgaacacatgaaaatt |
38224028 |
T |
|
| Q |
201 |
atatgctctgaaataaattatttatgttttgtaccttgtatattctt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38224029 |
atatgctctgaaataaattatttatgttttgtaccttgtatgttctt |
38224075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University