View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_high_2 (Length: 592)
Name: NF6981_high_2
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 29739734 - 29740312
Alignment:
| Q |
1 |
tcactcacaaaagatgaatcactagatgtgatctagtagaagcattcatcttcaactcatactagaatgaagagtcatcagagaaaaatataatgtacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
29739734 |
tcactcacaaaagatgaatcactagatgtgatctagtagaagcattcatcttcagctcatactagaatgaagagtcatcagagaataatataatgtgcga |
29739833 |
T |
|
| Q |
101 |
tgattaatcatgaaagtcaagagagcatcttgaatctcacaactttgaacatgacagcttgttaaaacagcgcccttactttactcatggnnnnnnnnnc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
29739834 |
tgattaatcatgaaagtcaagagagcatcttgaatctcacaactttggacatgacagcttgttaaaacagcgcccttactctactcatggtttttttttc |
29739933 |
T |
|
| Q |
201 |
tacgatatccatacttagggatgacaatgtgattcggtcctccctgtttaggcccacctcactattaactcgtgaaaaacaaggcgaagtggggtggacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29739934 |
tacgatatccatacttagggatgacaatgtgattcggtcctccctgtttaggcccacctcactattaactcgtgaaaaacaaggcgaagtggggtggacc |
29740033 |
T |
|
| Q |
301 |
aacataggtggtcgagttcaaattttcaccccaccccttagcgagttgatgagatggcccgtcaaaaaatgttttttcaaccccaccccttatattaatc |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29740034 |
aacatagatggtcgagttcaaattttcaccccaccccttagcgagttgatgagatggcccgtcaaaaaatgttttttcaaccccaccccttatactaatc |
29740133 |
T |
|
| Q |
401 |
gaatgttttttcaaatctatttttcttatattttcttgcaacttcccaactaagctaaactctccacttctttattatttcacatacattgagtagttct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29740134 |
gaatgttttttcaaatctatttttcttatattttcttgcaacttcccaactaagctaaactctccacttctttattatttcacatacattgagtagttct |
29740233 |
T |
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| Q |
501 |
ccaagaagtactctctaggaatggttttttgtgttgatttccaatcatgcatttagtatgcacatttgatgattctttt |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29740234 |
ccaagaagtactctctaggaatggttttttgtgttgatttccaatcatgcatttagtatgcacatttgatgattctttt |
29740312 |
T |
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