View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_high_21 (Length: 249)
Name: NF6981_high_21
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27571997 - 27571774
Alignment:
| Q |
1 |
gcaactgtttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgattaatacatggacgga |
100 |
Q |
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| T |
27571997 |
gcaactgtttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgattaatacatggacgga |
27571898 |
T |
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| Q |
101 |
acaataaaaaaatcttcaacagnnnnnnnnnnntggtttctatagtaattagcttcaactaatctatctaaatctccattagcatgatctagagctcaat |
200 |
Q |
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| T |
27571897 |
acaataa-aaaatcttcaacag-aaaaaaaaaatggtttctatagtaattagcttcaactaatctatctaaatctccattagcatgatctagagctcaat |
27571800 |
T |
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| Q |
201 |
tcaagcgagaagtaagatttaggaat |
226 |
Q |
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| T |
27571799 |
tcaagcgagaagtaagatttaggaat |
27571774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 27567485 - 27567419
Alignment:
| Q |
147 |
aattagcttcaactaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagt |
213 |
Q |
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| T |
27567485 |
aattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagt |
27567419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 27414212 - 27414293
Alignment:
| Q |
147 |
aattagcttcaactaatctatctaaatctccattagcat--gatctagagctcaattcaagcgagaagtaagatttaggaat |
226 |
Q |
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| T |
27414212 |
aattagcctcaactaatctatctaaagctccgttagcataatatctacagctcaattcatgcgagaagtgaggttttggaat |
27414293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 27424432 - 27424503
Alignment:
| Q |
157 |
aactaatctatctaaatctccattagcatg--atctagagctcaattcaagcgagaagtaagatttaggaat |
226 |
Q |
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||||||||||| | |||||| ||||||||| ||||| ||||||||||| ||||||||| || ||| ||||| |
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| T |
27424432 |
aactaatctatattaatctctattagcatgatatctacagctcaattcatgcgagaagtgaggtttcggaat |
27424503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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