View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6981_high_28 (Length: 215)
Name: NF6981_high_28
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_28 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 8322424 - 8322638
Alignment:
| Q |
1 |
atatcctgatcctcatgcccgtcatccatttttcaggaaaagctcttttgatttccttagaacaccacctggatataaaagaagatactgtaatgcttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8322424 |
atatcctgatcctcatgcccgtcatccatttttcaggaaaagctgttttgatttccttagaaaaccacctggatataaaagaagatactgtaatgcttgt |
8322523 |
T |
|
| Q |
101 |
ggaggagatgtgttagggtttgtttatcattgctctaaaacaggatatgatcttcatccttgttgtttgaagctgcaagatagtatttctgatggaaacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8322524 |
ggaggagatgtgttagggtttgtttatcattgctctaaaacaggatatgatcttcatccttgttgtttgaagctgcaagatagtatttctgatggagacg |
8322623 |
T |
|
| Q |
201 |
tgaaactgcaactct |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8322624 |
tgaaactgcaactct |
8322638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 8262543 - 8262350
Alignment:
| Q |
1 |
atatcctgatcctcatgcccgtcatccatttttcaggaaaagctcttttgatttccttagaacaccacctggatataaaagaagatactgtaatgcttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| || |||| || | |||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
8262543 |
atatcctgatcctcatgcccgtcatccatttttcaaagaaagctatttcgaattccataagaaaccaactggaaataaaacaagatactgtaatgcttgt |
8262444 |
T |
|
| Q |
101 |
ggaggagatgtgttagggtttgtttatcattgctctaaaacaggatatgatcttcatccttgttgtttgaagctgcaagatagtatttctgatg |
194 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| || |||||||||| |||| |
|
|
| T |
8262443 |
ggaaaagatgtgttagggtttgtttatcattgctctagcacagactatgatcttcatccatgttgtttgaagctgaaacatagtatttcagatg |
8262350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 8279861 - 8280033
Alignment:
| Q |
22 |
tcatccatttttcaggaaaagctcttttgatttccttagaacaccacctggatataaaagaagatactgtaatgcttgtggaggagatgtgttagggttt |
121 |
Q |
| |
|
||||||||||||| |||||||| ||| || |||| | ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8279861 |
tcatccatttttcgagaaaagctatttcgagttccatcgaaaaccacctggatataaaacaagatactgtaatgcttgtggaaaagatgtgttagggttt |
8279960 |
T |
|
| Q |
122 |
gtttatcattgctctaaaacaggatatgatcttcatccttgttgtttgaagctgcaagatagtatttctgatg |
194 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| |||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
8279961 |
gtttatcattgctctagcacagactatgatcttcatccatgttgtttgaagttgcaacatagtatatctgatg |
8280033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 8255593 - 8255493
Alignment:
| Q |
93 |
atgcttgtggaggagatgtgttagggtttgtttatcattgctctaaaacaggatatgatcttcatccttgttgtttgaagctgcaagatagtatttctga |
192 |
Q |
| |
|
|||||||||| |||||||||||| ||| | || ||||| || ||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8255593 |
atgcttgtgggaaagatgtgttaggttttttctaccattgttcccgaacaggatatgctctacatccttgttgtttgaagctgcaagataaaatttctga |
8255494 |
T |
|
| Q |
193 |
t |
193 |
Q |
| |
|
| |
|
|
| T |
8255493 |
t |
8255493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University