View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_high_3 (Length: 584)
Name: NF6981_high_3
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 36942260 - 36941695
Alignment:
| Q |
1 |
ggtgaatttgaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataatttcaaag |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942260 |
ggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataatttcaaag |
36942161 |
T |
|
| Q |
101 |
atgagcataagctaggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctattaagagtgtgtcagaagattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942160 |
atgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaagacacaaaatcttatgttgctattaagagtgtgtcagaagattc |
36942061 |
T |
|
| Q |
201 |
tcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatcaaaggaaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942060 |
tcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatcaaaggaaa |
36941961 |
T |
|
| Q |
301 |
aaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatatacaatag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941960 |
aaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatatacaatag |
36941861 |
T |
|
| Q |
401 |
ctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcaga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941860 |
ctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcaga |
36941761 |
T |
|
| Q |
501 |
gtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaac |
566 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941760 |
atttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaac |
36941695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 36938858 - 36939424
Alignment:
| Q |
1 |
ggtgaatttgaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataatttcaaag |
100 |
Q |
| |
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||||||||||||||||||||||| || ||||| ||||| ||| ||||||| | ||||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
36938858 |
ggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtatacatatgcagaattagcacacgcagctaatgatttcaaag |
36938957 |
T |
|
| Q |
101 |
atgagcataagctaggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctattaagagtgtgtcagaagattc |
200 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
36938958 |
acgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttatgttgctgttaagagggtgtcagaagattc |
36939057 |
T |
|
| Q |
201 |
tcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatcaaaggaaa |
300 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
36939058 |
acatcaaggaataaaggagttcgcatcagaagtaacaattattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatgaaagaaaa |
36939157 |
T |
|
| Q |
301 |
aaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatatacaatag |
400 |
Q |
| |
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|| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
36939158 |
aagcttttacttgtatatgagtacatgccaaatggtagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatag |
36939257 |
T |
|
| Q |
401 |
ctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcaga |
500 |
Q |
| |
|
||| ||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939258 |
ctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcaga |
36939357 |
T |
|
| Q |
501 |
gtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaact |
567 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
36939358 |
gtttaatgcaaaacttggagatttcggtttagcaaggtttgtggaccatgcaaaaggtgcacaaact |
36939424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 527
Target Start/End: Original strand, 36949483 - 36949613
Alignment:
| Q |
397 |
atagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
496 |
Q |
| |
|
||||||| ||| ||||| || ||||| |||||| |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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|
| T |
36949483 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36949582 |
T |
|
| Q |
497 |
cagagtttaacgcaaaacttggagatttcgg |
527 |
Q |
| |
|
| | || || |||| |||||||||||||| |
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| T |
36949583 |
ctaatttcaatacaaagcttggagatttcgg |
36949613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 527
Target Start/End: Original strand, 36959617 - 36959747
Alignment:
| Q |
397 |
atagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
496 |
Q |
| |
|
||||||| ||| ||||| || ||||| |||||| |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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| T |
36959617 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36959716 |
T |
|
| Q |
497 |
cagagtttaacgcaaaacttggagatttcgg |
527 |
Q |
| |
|
| | || || |||| |||||||||||||| |
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|
| T |
36959717 |
ctaatttcaatacaaagcttggagatttcgg |
36959747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 494
Target Start/End: Original strand, 36934450 - 36934535
Alignment:
| Q |
409 |
ttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
494 |
Q |
| |
|
||||| || |||||| | || ||||| |||||||||||| ||||||| | ||||| ||||||||| |||| ||||| |||||||| |
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|
| T |
36934450 |
ttggcctcggcattgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttgga |
36934535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 5820934 - 5820970
Alignment:
| Q |
418 |
gcattgttgtacttgcatgaagaatgggaacaatgtg |
454 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
5820934 |
gcattgttgtaccttcatgaagaatgggaacaatgtg |
5820970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 494
Target Start/End: Original strand, 47871573 - 47871658
Alignment:
| Q |
409 |
ttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
494 |
Q |
| |
|
||||| || ||||||||||| | ||||||||||||||||||||||| | ||||||||||||||| | || ||||| |||||||| |
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|
| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttgga |
47871658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 290
Target Start/End: Original strand, 47871277 - 47871454
Alignment:
| Q |
113 |
taggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctattaagagtgtgtcagaagattctcatcaagggat |
212 |
Q |
| |
|
|||||||||| || ||||| |||||||||| ||| | | | ||||||| | | || |||||||||| ||||| | ||| ||| ||| | |||||||| |
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|
| T |
47871277 |
taggacaaggtggttttggtggtgtttataaaggctatttgaaagacatagattccaatgttgctataaagagaatatcaagagagtctaaacaagggat |
47871376 |
T |
|
| Q |
213 |
aaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtca |
290 |
Q |
| |
|
|||||||| |||| | ||||| | ||| |||||| || | ||||| || ||| |||| ||| | |||||||||||||| |
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|
| T |
47871377 |
aaaggaatatgcaactgaagtgaagatcattagccaacttaggcacaggaatttagtacaactaattggttggtgtca |
47871454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 39226160 - 39226124
Alignment:
| Q |
307 |
ttgcttgtgtatgagtacatgccaaatggtagtttag |
343 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
39226160 |
ttgcttgtttatgagtacatgacaaatggtagtttag |
39226124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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