View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6981_high_6 (Length: 423)
Name: NF6981_high_6
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 24631697 - 24632092
Alignment:
| Q |
18 |
aagatgatggtaatagaatgaaataagtcatcaaaaagtgttatctaaattgttttcttctctcttaaggtctgatccggcgaagcaggacttgtatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24631697 |
aagatgatggtaatagaatgaaataagtcatcaaaaagtgttatctaaattgttttcttctctcttaaggtctgatccggcgaaccaggacttgtatttt |
24631796 |
T |
|
| Q |
118 |
cttttgtgattatagaaccaaatctcatattcttcatacatttaattcctcttgttctttgggactaataaaatcaaataaccgggataatctcacaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24631797 |
cttttgtgattatagaaccaaatctcatattcttcatacatttaattcctcttgttctttgggactaataaaatcaaataaccgggataatctcacaaaa |
24631896 |
T |
|
| Q |
218 |
tcgaaaacagaccataaattgtgttgcaaaaagaaatccatatcacttggaagagaagaaacattagtaagtgaaatatttagaagatttgtggcttgta |
317 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24631897 |
tcgaaaacagaccataaattgtgttggaaaaagaaatccatatcacttggaagagaagaaacattagtaagtgaaatatttagaagatttgtggcttgta |
24631996 |
T |
|
| Q |
318 |
tctgtctacctcattcaagctcctggatctttttcctgagttatctctctttctggctttatcatattgtggttcaaaaactagtatctgatgtcc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24631997 |
tctgtctacctcattcaagctcctggatctttttcctgagttatctctctttctggctttatcatattgtggttcaaaaactagtatctcatgtcc |
24632092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 24685160 - 24685321
Alignment:
| Q |
81 |
cttaaggtctgatccggcgaagcaggacttgtattttcttttgtgattatagaaccaaatctcatattcttcatacatttaa--ttcctcttgttctttg |
178 |
Q |
| |
|
|||||||||||||| | ||| |||||| |||||| |||| |||| ||||| ||||| |||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
24685160 |
cttaaggtctgatcttgagaaccaggacctgtattctcttctgtgcttataaaaccacatctcatattcttcatgcatttaacattcctcttgttcttgg |
24685259 |
T |
|
| Q |
179 |
ggactaataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtg |
240 |
Q |
| |
|
|||| |||||||||||||||| | | |||||||||||||| || ||| |||||||| |||| |
|
|
| T |
24685260 |
ggacctataaaatcaaataaccagaagaatctcacaaaatcaaacacaaaccataaactgtg |
24685321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 306
Target Start/End: Original strand, 24653435 - 24653664
Alignment:
| Q |
81 |
cttaaggtctgatccggcgaagcaggacttgtattttcttttgtgattatagaaccaaatctcatattcttcatacattta--attcctcttgttctttg |
178 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| ||| ||| ||| ||||||| ||||||| |||||| |||||||| |||||||| |||||| |
|
|
| T |
24653435 |
cttaaggtctgatcctgagaaccaggacttgtattctctcaagtgcttacagaaccacatctcatgttcttcctacatttaacattcctctctttctttc |
24653534 |
T |
|
| Q |
179 |
ggactaataaaatcaaataaccgggataatct--cacaaaatcgaaaacagaccataaattgtgttgcaaaaa--gaaatccatatcacttggaagagaa |
274 |
Q |
| |
|
|||| ||||||||||| |||| ||| ||||| || |||||| || ||| || ||||| |||| | ||||| |||| ||||||| |||| | || |
|
|
| T |
24653535 |
ggacctataaaatcaaagaaccaggagaatctcgcataaaatcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatcatatgga--aaaa |
24653632 |
T |
|
| Q |
275 |
gaaacattagtaagtgaaatatttagaagatt |
306 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
24653633 |
gaaacagtagtaagtgaaatatttagaagatt |
24653664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 404
Target Start/End: Original strand, 24685340 - 24685468
Alignment:
| Q |
276 |
aaacattagtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctgagttatctctctttctggct |
375 |
Q |
| |
|
||||| | ||||||| || |||||||||||| | ||||| | | ||||||||||| || ||||||| | |||||||||||| || ||||| |||||| | |
|
|
| T |
24685340 |
aaacagtggtaagtgcaacatttagaagattcgcggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggtt |
24685439 |
T |
|
| Q |
376 |
ttatcatattgtggttcaaaaactagtat |
404 |
Q |
| |
|
||||||| | ||||| || |||||||||| |
|
|
| T |
24685440 |
ttatcatctcgtggtccagaaactagtat |
24685468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 24682419 - 24682559
Alignment:
| Q |
84 |
aaggtctgatccggcgaagcaggacttgtattttcttttgtgattatagaaccaaatctcatattcttcatacattta-----attcctcttgttctttg |
178 |
Q |
| |
|
|||||||||||| | ||| ||| ||||||||| |||| ||| ||| ||||||| ||||||| |||||| |||||||| |||||||| |||||| |
|
|
| T |
24682419 |
aaggtctgatcctgagaaccagcacttgtattctcttaagtgcttacagaaccacatctcatgttcttcctacatttaacattattcctctctttctttc |
24682518 |
T |
|
| Q |
179 |
ggactaataaaatcaaataaccgggataatctcacaaaatc |
219 |
Q |
| |
|
|||| ||||||||||| |||| ||| ||||||| |||||| |
|
|
| T |
24682519 |
ggacctataaaatcaaagaaccaggagaatctcataaaatc |
24682559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 356
Target Start/End: Original strand, 41806183 - 41806355
Alignment:
| Q |
185 |
ataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtgttgcaaaaagaaatccatatcacttggaagagaagaaa-catta |
283 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| || ||| |||||||| | || | |||| ||||| ||| | |||| | |||||| ||| || || |
|
|
| T |
41806183 |
ataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagaaaaaaacagta |
41806282 |
T |
|
| Q |
284 |
gtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctga |
356 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | |||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
41806283 |
gtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
41806355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 41800038 - 41800141
Alignment:
| Q |
162 |
attcctcttgttctttgggactaataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtgttgcaaaaagaaatccatatc |
261 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||| ||| ||||| |||||||| || ||| |||||||| |||| | |||| ||||| || ||| |
|
|
| T |
41800038 |
attccccttgttcttcgggacctataaaatcaaataaccaggagaatctaacaaaatcaaacacaaaccataaactgtgcaggaaaaggaaatgcacatc |
41800137 |
T |
|
| Q |
262 |
actt |
265 |
Q |
| |
|
|||| |
|
|
| T |
41800138 |
actt |
41800141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 278721 - 278522
Alignment:
| Q |
81 |
cttaaggtctgatccggcgaagcaggacttgtattttcttttgtgattatagaaccaaatctcatattcttcatacatttaa--ttcctcttgttctttg |
178 |
Q |
| |
|
||||||||||||||| | ||| ||| ||||||||| |||| ||| |||||||| || | || || ||||| ||||||||| |||||||||||||||| |
|
|
| T |
278721 |
cttaaggtctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttg |
278622 |
T |
|
| Q |
179 |
ggactaataaaatcaaataaccgggataatctcacaaaatcgaaa-acagaccataaattgtgttgcaaaaagaaatccatatcacttggaagagaagaa |
277 |
Q |
| |
|
|||| |||| ||||||| || ||| ||| ||| |||||| ||| || |||||||| ||| || |||| ||||| ||||||| |||||| ||||||| |
|
|
| T |
278621 |
ggacctataatatcaaatgacaaggagaatttcagaaaatcaaaatccaaaccataaaccgtggtggaaaaggaaatgcatatcagttggaa-agaagaa |
278523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University