View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6981_high_7 (Length: 415)
Name: NF6981_high_7
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 33 - 407
Target Start/End: Original strand, 27133662 - 27134052
Alignment:
| Q |
33 |
aaatatttgatcaattatttannnnnnnaaccaattaaatggactctccaagtagttaatgagttttaggtaaaaacaaattgtttaaaaatatccgaat |
132 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27133662 |
aaatatttgatcaattatttatttttttaaccaattaaatggacactccaagtagttaatgagttttaggtaaaaacaaattgtttaaaaatatccgaat |
27133761 |
T |
|
| Q |
133 |
tcaaatcttaactgaaataatattttacttatagttggtacataatacaaagtgtcgtaaattctaaagtaccgtgaatgtgattcctaccgataaaaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27133762 |
tcaaatcttaactgaaataatattttacttg--gttgctacataatacaaagtgtcgtaaattctaaagtaccgataatgtgattcctaccgataaaaaa |
27133859 |
T |
|
| Q |
233 |
gagatatatgagtttttgtattgttggatatttactcttgaaatatttttt-----------------aatttactcatgagattttgatggtggtaaat |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27133860 |
gagatatacgagtttttgtattgttggatatttactcttgaaatattttttaattttttttgtgtgtaaatttactcatgagattttgatggtggtaaat |
27133959 |
T |
|
| Q |
316 |
ctctcctcacacaataatatgc-aacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctc |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27133960 |
ctctcctcacacaataatatgcaaacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctc |
27134052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 27146982 - 27147086
Alignment:
| Q |
285 |
atttactcatgagattttgatggtggtaaatctctcctcacacaataatatgcaacattgtgaccaaagttgaattagtggtatcttctaactctataaa |
384 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
27146982 |
atttactctttagattttgatggtggtaaatctctcctcacacaataatataaaacattgggagcaaagttgaattcgtgatatcttctcactctataaa |
27147081 |
T |
|
| Q |
385 |
tactt |
389 |
Q |
| |
|
||||| |
|
|
| T |
27147082 |
tactt |
27147086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University