View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6981_low_1 (Length: 645)

Name: NF6981_low_1
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6981_low_1
NF6981_low_1
[»] chr4 (13 HSPs)
chr4 (1-412)||(27572178-27572589)
chr4 (422-632)||(27572641-27572851)
chr4 (273-400)||(22851306-22851433)
chr4 (274-412)||(30563537-30563675)
chr4 (345-410)||(25505205-25505270)
chr4 (275-407)||(9363321-9363453)
chr4 (273-377)||(36193432-36193534)
chr4 (273-327)||(12885049-12885103)
chr4 (487-542)||(9363169-9363224)
chr4 (560-625)||(27641387-27641452)
chr4 (281-325)||(19145910-19145954)
chr4 (487-539)||(25505402-25505454)
chr4 (294-326)||(49535851-49535883)
[»] chr1 (13 HSPs)
chr1 (267-412)||(3167295-3167438)
chr1 (275-412)||(4941612-4941749)
chr1 (267-412)||(21485969-21486114)
chr1 (273-409)||(8221749-8221883)
chr1 (283-399)||(40777901-40778016)
chr1 (278-412)||(13269350-13269483)
chr1 (340-412)||(46149932-46150004)
chr1 (273-325)||(51879047-51879099)
chr1 (282-397)||(23288544-23288659)
chr1 (346-399)||(24646944-24646997)
chr1 (282-390)||(45885831-45885935)
chr1 (487-542)||(4941848-4941903)
chr1 (280-325)||(23168271-23168316)
[»] chr7 (5 HSPs)
chr7 (273-412)||(7738872-7739010)
chr7 (342-410)||(2746777-2746845)
chr7 (302-393)||(35759228-35759319)
chr7 (340-409)||(24504451-24504520)
chr7 (266-329)||(30869130-30869193)
[»] chr6 (9 HSPs)
chr6 (273-410)||(24209288-24209425)
chr6 (292-407)||(2603861-2603974)
chr6 (274-390)||(24585077-24585192)
chr6 (270-399)||(3861009-3861138)
chr6 (273-329)||(15494246-15494302)
chr6 (487-542)||(3860844-3860899)
chr6 (276-325)||(13278817-13278866)
chr6 (277-324)||(32071914-32071961)
chr6 (277-324)||(32084265-32084312)
[»] chr8 (17 HSPs)
chr8 (273-412)||(28430094-28430234)
chr8 (273-412)||(17844983-17845125)
chr8 (277-412)||(1214184-1214319)
chr8 (343-409)||(5725904-5725970)
chr8 (273-410)||(12722313-12722449)
chr8 (273-330)||(23273822-23273879)
chr8 (270-325)||(24580033-24580088)
chr8 (346-412)||(13241205-13241271)
chr8 (273-329)||(12520550-12520606)
chr8 (487-542)||(1214418-1214473)
chr8 (277-325)||(30412836-30412884)
chr8 (343-390)||(25382358-25382405)
chr8 (487-526)||(29423351-29423390)
chr8 (273-327)||(33384600-33384654)
chr8 (285-330)||(28831498-28831543)
chr8 (273-329)||(16872255-16872311)
chr8 (494-542)||(17856959-17857007)
[»] chr3 (10 HSPs)
chr3 (273-410)||(52032894-52033030)
chr3 (273-374)||(29019635-29019735)
chr3 (345-412)||(26536389-26536456)
chr3 (341-410)||(26104527-26104596)
chr3 (269-330)||(53461793-53461854)
chr3 (277-329)||(21795457-21795509)
chr3 (273-325)||(33440712-33440764)
chr3 (273-329)||(47042665-47042721)
chr3 (345-400)||(53461720-53461775)
chr3 (273-329)||(30611731-30611787)
[»] chr2 (14 HSPs)
chr2 (269-412)||(37605963-37606106)
chr2 (345-414)||(20506600-20506669)
chr2 (279-410)||(39303362-39303491)
chr2 (342-400)||(21136415-21136473)
chr2 (283-412)||(36520964-36521091)
chr2 (273-412)||(36076296-36076436)
chr2 (273-400)||(11033196-11033322)
chr2 (345-412)||(13536885-13536952)
chr2 (273-325)||(6606258-6606310)
chr2 (342-412)||(8267385-8267455)
chr2 (273-398)||(20511689-20511812)
chr2 (273-325)||(13511161-13511213)
chr2 (342-406)||(4079338-4079402)
chr2 (487-542)||(20506762-20506818)
[»] chr5 (8 HSPs)
chr5 (297-405)||(41732334-41732442)
chr5 (273-325)||(43585682-43585734)
chr5 (273-327)||(19527959-19528013)
chr5 (273-329)||(17095626-17095682)
chr5 (342-412)||(28440751-28440818)
chr5 (361-412)||(37941308-37941359)
chr5 (273-326)||(3956134-3956187)
chr5 (357-410)||(39600947-39601000)
[»] scaffold0443 (1 HSPs)
scaffold0443 (341-412)||(7566-7637)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 27572178 - 27572589
Alignment:
Q  1 aataattttcagttaatttagctggttccatctagctctggtaaatttatttgcaannnnnnnnaacaagaaatttatttgcagttgattgcaaatattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  27572178 aataattttcagttaatttagctggttccatctagctctggtaaatttatttgcaattttttttaacaagaaatttatttgcagttgattgcaaatattg 27572277  T
Q  101 cttcaaatctaaagttttttactgataagtattgtaaaaatagtagtaaaagaaaacttgacataaacttcaaggctcaactgtgaggcatctccctaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572278 cttcaaatctaaagttttttactgataagtattgtaaaaatagtagtaaaagaaaacttgacataaacttcaaggctcaactgtgaggcatctccctaag 27572377  T
Q  201 atatacacatctacaataatggtggacttgattagagggacatgcggtccatatgccaatagtttgaggcatggccggcctaagggccaagcaacccaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572378 atatacacatctacaataatggtggacttgattagagggacatgcggtccatatgccaatagtttgaggcatggccggcctaagggccaagcaacccaag 27572477  T
Q  301 caagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttg 400  Q
    ||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||     
T  27572478 caagggctttaggcctcaaaattttggatgaaaaaaaatgcctctaaaaaattaatttggttataattatattatatgacagataaattatagatatttt 27572577  T
Q  401 gataacttaact 412  Q
    ||||||||||||    
T  27572578 gataacttaact 27572589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 422 - 632
Target Start/End: Original strand, 27572641 - 27572851
Alignment:
Q  422 tccgaaaaattgatattatataaataatatgttagatctttcnnnnnnnnnnnnnnnnnnnntaatttaaaggccacattaaaatttttgttttatgcct 521  Q
    ||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||| |||||||||||||||    
T  27572641 tccgaaaaattgatattatataaataatatgttagatctttcaaaaaaaaatgttaaaaaaataatttaaaggccacattaaaaattttgttttatgcct 27572740  T
Q  522 cttaaattgttgggccggcccactgctctatctgcccacatttttgctggaaaatccccccatttatcagaagtaaatttccgatggtaagtttctctcg 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572741 cttaaattgttgggccggcccactgctctatctgcccacatttttgctggaaaatccccccatttatcagaagtaaatttccgatggtaagtttctctcg 27572840  T
Q  622 gaacacaggtt 632  Q
    |||||||||||    
T  27572841 gaacacaggtt 27572851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 273 - 400
Target Start/End: Complemental strand, 22851433 - 22851306
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  22851433 ggccggcctaagggctaagcaacccaagcaagggctttagacctcaaaattttgggtgaaaaaaaacgcctctaaaaaattaatttggttataagtatat 22851334  T
Q  373 tatatgacagataaattatagacatttg 400  Q
     |||||| |||||||  | |||||||||    
T  22851333 catatgatagataaacaacagacatttg 22851306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 274 - 412
Target Start/End: Original strand, 30563537 - 30563675
Alignment:
Q  274 gccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatatt 373  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||||| |   |         || |||||||||||||||||||||||||||||||    
T  30563537 gccgacctaagggccaagcaacccaagtaagggttttaggcctcaaaatttcgtaagaaaaaaaaggcttctaaaaaattaatttggttataagtatatt 30563636  T
Q  374 atatgacagataaattatagacatttggataacttaact 412  Q
    |||||||||||||||| |||||||||| ||| |||||||    
T  30563637 atatgacagataaattgtagacatttgtatagcttaact 30563675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 25505205 - 25505270
Alignment:
Q  345 taaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaa 410  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| |||||    
T  25505205 taaaaaattaatttggttataggtatattatatgacagataaattacagacatttgcatagcttaa 25505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 407
Target Start/End: Complemental strand, 9363453 - 9363321
Alignment:
Q  275 ccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatatta 374  Q
    ||||||||| || |||||||||||| ||||||||||| || ||||||  || ||||         ||||||| |||||||||||||||||||||||||||    
T  9363453 ccggcctaacggtcaagcaacccaaacaagggctttatgcttcaaaaaatttggtgaaaaaaaaggcctctataaaattaatttggttataagtatatta 9363354  T
Q  375 tatgacagataaattatagacatttggataact 407  Q
    || ||||||||||||| |  |||||| ||||||    
T  9363353 tacgacagataaattacaagcatttgcataact 9363321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 273 - 377
Target Start/End: Complemental strand, 36193534 - 36193432
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||||||||||||||||||||| |||||||||| |||| | ||||| ||||||| |          |||||||||||||||||||||||||||||||||    
T  36193534 ggccggcctaagggccaagcaactcaagcaagggttttaagtctcaatattttggataaaaaaaa--gcctctaaaaaattaatttggttataagtatat 36193437  T
Q  373 tatat 377  Q
    |||||    
T  36193436 tatat 36193432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 12885049 - 12885103
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgg 327  Q
    |||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  12885049 ggccggtctaagggtcaagcaacccaaacaagggttttaggcctcaaaattttgg 12885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 9363224 - 9363169
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaaattgttgggccggccc 542  Q
    |||||| ||||||||||||||||||||||| |||||||||  ||||||| ||||||    
T  9363224 tttaaaagccacattaaaatttttgttttaagcctcttaatctgttgggtcggccc 9363169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 560 - 625
Target Start/End: Complemental strand, 27641452 - 27641387
Alignment:
Q  560 catttttgctggaaaatccccccatttatcagaagtaaatttccgatggtaagtttctctcggaac 625  Q
    ||||||||| |||||| ||||||||||||| ||| | || |||||||||| |||| ||||||||||    
T  27641452 catttttgcaggaaaagccccccatttatcggaatttaagttccgatggtgagttactctcggaac 27641387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 19145910 - 19145954
Alignment:
Q  281 taagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||||| ||||| |||||| ||||||||||||||||||| |||||    
T  19145910 taagggtcaagccacccaaacaagggctttaggcctcaagatttt 19145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 25505402 - 25505454
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaaattgttgggccgg 539  Q
    |||||||| || |||||||||||||||||| ||||||||   |||||||||||    
T  25505402 tttaaaggtcatattaaaatttttgttttaggcctcttagtctgttgggccgg 25505454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 49535883 - 49535851
Alignment:
Q  294 acccaagcaagggctttaggcctcaaaattttg 326  Q
    |||||||||||||||||| ||||||||||||||    
T  49535883 acccaagcaagggctttaagcctcaaaattttg 49535851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 3167295 - 3167438
Alignment:
Q  267 aggcatggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataa 366  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||         |||||||||||||||||||||||||||    
T  3167295 aggcagggccggcctaagggccaagcaacccaagcaagggttttaggactcaa--ttttgggtgacaaaaaaggcctctaaaaaattaatttggttataa 3167392  T
Q  367 gtatattatatgacagataaattatagacatttggataacttaact 412  Q
    |||||||||| ||||||||||||||| | ||||| ||| |||||||    
T  3167393 gtatattataagacagataaattatatatatttgcatagcttaact 3167438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 412
Target Start/End: Original strand, 4941612 - 4941749
Alignment:
Q  275 ccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatatta 374  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||         |||||||||||||||||||||| |||| |||||||    
T  4941612 ccggtctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgggtgaaaaaaaaggcctctaaaaaattaatttggtcataattatatta 4941711  T
Q  375 tatgacagataaattatagacatttggataacttaact 412  Q
    ||||||| |||||||||||| ||||| ||| |||||||    
T  4941712 tatgacaaataaattatagatatttgaatagcttaact 4941749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 412
Target Start/End: Complemental strand, 21486114 - 21485969
Alignment:
Q  267 aggcatggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataa 366  Q
    ||||| |||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||     
T  21486114 aggcagggccggtctaagggtcaagcaactcaagtaagggctttaggcctcaaaattttgggcggaaaaaaaggcctctaaaaaattaatttggttatac 21486015  T
Q  367 gtatattatatgacagataaattatagacatttggataacttaact 412  Q
    | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  21486014 ggatattatgtgatagataaattatagacatttgcataacttaact 21485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 273 - 409
Target Start/End: Complemental strand, 8221883 - 8221749
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||          |||||  |||||||||||||||||||||||||    
T  8221883 ggccggcctaagggccaagcaacccaagcaagtgctttaggcctcaaaattttaggtgaaaaacaaaacctct--aaaattaatttggttataagtatat 8221786  T
Q  373 tatatgacagataaattatagacatttggataactta 409  Q
    ||||||||||||||| || ||||||||| | ||||||    
T  8221785 tatatgacagataaagtacagacatttgcacaactta 8221749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 283 - 399
Target Start/End: Original strand, 40777901 - 40778016
Alignment:
Q  283 agggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgacag 382  Q
    |||||||||||||||||||||| |||||||||| ||||||||| ||||         ||||||||||| |||||||||||||||||||||||||||||||    
T  40777901 agggccaagcaacccaagcaagagctttaggccacaaaattttaggtgaaaaaaag-gcctctaaaaatttaatttggttataagtatattatatgacag 40777999  T
Q  383 ataaattatagacattt 399  Q
    |||||||||||| ||||    
T  40778000 ataaattatagatattt 40778016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 278 - 412
Target Start/End: Complemental strand, 13269483 - 13269350
Alignment:
Q  278 gcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatat 377  Q
    |||||||||||||| |||| |||| ||| ||||| | ||||||||||||||||        | |||||||||||||||||||||| ||||||||||||||    
T  13269483 gcctaagggccaagaaacctaagcgaggactttatgtctcaaaattttgggtgaaaaaaagt-cctctaaaaaattaatttggttgtaagtatattatat 13269385  T
Q  378 gacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||| | | ||||| ||| |||||||    
T  13269384 gacagataaattacatatatttgtatatcttaact 13269350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 46149932 - 46150004
Alignment:
Q  340 gcctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||  |||||||| |||||||||||    
T  46149932 gcctctaaaaaattaatttggttataaatatattatataacaaataaattactgacatttgcataacttaact 46150004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 51879047 - 51879099
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51879047 ggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 51879099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 23288544 - 23288659
Alignment:
Q  282 aagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgaca 381  Q
    |||||| |||||||| ||||||| |||||||||||||||||| ||||           |||||||||||||||||||  |||||| |||||||||||| |    
T  23288544 aagggctaagcaacctaagcaagagctttaggcctcaaaattatgggcaagaaaaaaggcctctaaaaaattaatttaattataaatatattatatgata 23288643  T
Q  382 gataaattatagacat 397  Q
    ||||||||| ||||||    
T  23288644 gataaattacagacat 23288659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 24646997 - 24646944
Alignment:
Q  346 aaaaaattaatttggttataagtatattatatgacagataaattatagacattt 399  Q
    |||||||| |||||||||||| ||||| |||||||| |||||||||||||||||    
T  24646997 aaaaaattgatttggttataaatatataatatgacaaataaattatagacattt 24646944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 390
Target Start/End: Original strand, 45885831 - 45885935
Alignment:
Q  282 aagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgaca 381  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||||||||          | || ||||||||||||||| |||||| ||||||||||||||    
T  45885831 aagggacaagcaactcaagtaagggttttaggcctcaaaattttgggtaaaaaa----gtctttaaaaaattaatttgcttataaatatattatatgaca 45885926  T
Q  382 gataaatta 390  Q
     ||||||||    
T  45885927 aataaatta 45885935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 4941848 - 4941903
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaaattgttgggccggccc 542  Q
    |||||| |||||||||||||||||| |||| |||||||||  ||||||| ||||||    
T  4941848 tttaaaagccacattaaaatttttgctttaggcctcttaatctgttgggacggccc 4941903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 23168271 - 23168316
Alignment:
Q  280 ctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||| |||||||| ||||||||||| |||||||||||||| |||||    
T  23168271 ctaaaggccaagccacccaagcaagagctttaggcctcaagatttt 23168316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 273 - 412
Target Start/End: Complemental strand, 7739010 - 7738872
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||         ||||||||||||| ||||||||||||| |||||    
T  7739010 ggccgacctaagggccaagcaatcaaagcaagggctttaagcctcaaaattttgggtgaaaaaaaa-gcctctaaaaaatcaatttggttataaatatat 7738912  T
Q  373 tatatgacagataaattatagacatttggataacttaact 412  Q
    |||||||||||||||||| ||||||||| ||| |||||||    
T  7738911 tatatgacagataaattacagacatttgcatagcttaact 7738872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 2746845 - 2746777
Alignment:
Q  342 ctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaa 410  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| ||||  ||||| |||||||||    
T  2746845 ctctaaaaaattaattttgttataagtatattatatgatagataaatcataggtatttgcataacttaa 2746777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 35759319 - 35759228
Alignment:
Q  302 aagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgacagataaattatag 393  Q
    ||||||||||| |||||||||||||||||         | || |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  35759319 aagggctttagacctcaaaattttgggtggaaaaataggtctttaaaaaattaatttagttataagtatattatatgatagataaattatag 35759228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 24504520 - 24504451
Alignment:
Q  340 gcctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataactta 409  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||| |||||||  |||| ||||||||    
T  24504520 gcctctaacaaactaatttggttataagtatattatatgacaaataagttatagatgtttgcataactta 24504451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 30869193 - 30869130
Alignment:
Q  266 gaggcatggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||| ||||||| |||||| ||||| ||| |||||||||||||| ||||||| |||||||||    
T  30869193 gaggcagggccggcttaagggtcaagccaccaaagcaagggctttatgcctcaagattttgggt 30869130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 273 - 410
Target Start/End: Complemental strand, 24209425 - 24209288
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||  |          ||||||||||||||||||||||||||||||||    
T  24209425 ggccggcttaagggccaagcaacccaagcaagggctataggcctcaaaattttggacgaaaaaaaagacctctaaaaaattaatttggttataagtatat 24209326  T
Q  373 tatatgacagataaattatagacatttggataacttaa 410  Q
    ||||| | |||||||||| |  |||||| |||||||||    
T  24209325 tatatcatagataaattacatgcatttgcataacttaa 24209288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 2603974 - 2603861
Alignment:
Q  292 caacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgacagataaattat 391  Q
    |||||||||||||||||||| ||||||||||||||||||          |||||||| |||||||||||||||||||||||||||| ||||||||||||     
T  2603974 caacccaagcaagggctttaagcctcaaaattttgggtgaaaaaaga--cctctaaataattaatttggttataagtatattatataacagataaattac 2603877  T
Q  392 agacatttggataact 407  Q
    ||||||||| ||||||    
T  2603876 agacatttgtataact 2603861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 24585077 - 24585192
Alignment:
Q  274 gccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatatt 373  Q
    ||||| ||||||||||||||| |||||||  || ||||||||| |||||||||||||        |||||||||||||||||| | ||||||||||||||    
T  24585077 gccggtctaagggccaagcaatccaagcagaggttttaggccttaaaattttgggtgaaaaaaa-tgcctctaaaaaattaatctagttataagtatatt 24585175  T
Q  374 atatgacagataaatta 390  Q
    |||||| ||||||||||    
T  24585176 atatgagagataaatta 24585192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 3861138 - 3861009
Alignment:
Q  270 catggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagta 369  Q
    |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||| |            || |||||||||||||| ||||||| ||    
T  3861138 catggccggcctaagggccaagcaacccaaacaagggttttaggtttcaaaattttggctaaaaaaaaaaaactataaaaaattaatttagttataatta 3861039  T
Q  370 tattatatgacagataaattatagacattt 399  Q
    |||||||||||| |||||||| ||| ||||    
T  3861038 tattatatgacatataaattacagatattt 3861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 15494246 - 15494302
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||    
T  15494246 ggccggcctaagggccaagccaccaaagcgagggctttaggcctcaagattttgggt 15494302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 3860899 - 3860844
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaaattgttgggccggccc 542  Q
    ||||||| |||||||||||||||||||||| |||||||||  |||||| |||||||    
T  3860899 tttaaagaccacattaaaatttttgttttaagcctcttaatctgttggaccggccc 3860844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 13278866 - 13278817
Alignment:
Q  276 cggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    ||||||||||||||||| | | |||||||||||||||||||||| |||||    
T  13278866 cggcctaagggccaagctatcaaagcaagggctttaggcctcaagatttt 13278817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 32071914 - 32071961
Alignment:
Q  277 ggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattt 324  Q
    |||| ||||||||||| || ||||||||||||| ||||||||||||||    
T  32071914 ggcccaagggccaagccactcaagcaagggcttaaggcctcaaaattt 32071961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 32084265 - 32084312
Alignment:
Q  277 ggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattt 324  Q
    |||| ||||||||||| || ||||||||||||| ||||||||||||||    
T  32084265 ggcccaagggccaagccactcaagcaagggcttaaggcctcaaaattt 32084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 273 - 412
Target Start/End: Complemental strand, 28430234 - 28430094
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtg-nnnnnnnntgcctctaaaaaattaatttggttataagtata 371  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||| |||||||||||||||||||||| ||||    
T  28430234 ggccgacctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaaaagcctttaaaaaattaatttggttataaatata 28430135  T
Q  372 ttatatgacagataaattatagacatttggataacttaact 412  Q
     ||||||| |||||||||  ||||||||  |||||||||||    
T  28430134 atatatgatagataaatttaagacatttacataacttaact 28430094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 412
Target Start/End: Complemental strand, 17845125 - 17844983
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgc---ctctaaaaaattaatttggttataagta 369  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||              ||||||||||||||||||||||||||||    
T  17845125 ggccggtctaagggccaagcaacccaagcaagggttataggcctcaaaattttggatgaaaaaaaaaaaaatctctaaaaaattaatttggttataagta 17845026  T
Q  370 tattatatgacagataaattatagacatttggataacttaact 412  Q
    |||||||| |||||||||||  ||||||||| ||| |||||||    
T  17845025 tattatataacagataaatttaagacatttgcatagcttaact 17844983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 277 - 412
Target Start/End: Original strand, 1214184 - 1214319
Alignment:
Q  277 ggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattata 376  Q
    ||||||||||||||| ||  ||||||| || ||||||||||||||||||| |||         ||||||||||||||||||   ||||||||||||||||    
T  1214184 ggcctaagggccaagtaattcaagcaaaggttttaggcctcaaaattttgagtgaaaaaaaaggcctctaaaaaattaattaatttataagtatattata 1214283  T
Q  377 tgacagataaattatagacatttggataacttaact 412  Q
    ||||| |||||||| ||||||||| ||| |||||||    
T  1214284 tgacaaataaattacagacatttgcatagcttaact 1214319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 5725970 - 5725904
Alignment:
Q  343 tctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataactta 409  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  5725970 tctaaaaaattaatttgattataaatatattatatgatagataaattatagacatttgcataactta 5725904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 410
Target Start/End: Original strand, 12722313 - 12722449
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    |||||| |||||||||||  ||| ||||||| | ||||||||||||||||||||| ||         | || ||||||||||||||| |||||| |||||    
T  12722313 ggccggtctaagggccaaataactcaagcaaagactttaggcctcaaaattttggatgaaaaaaag-gtctttaaaaaattaatttgattataaatatat 12722411  T
Q  373 tatatgacagataaattatagacatttggataacttaa 410  Q
    ||||||| |||| ||||||||||||||| ||| |||||    
T  12722412 tatatgatagatgaattatagacatttgcatagcttaa 12722449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 23273879 - 23273822
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtg 330  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  23273879 ggccgtcctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgggtg 23273822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 24580088 - 24580033
Alignment:
Q  270 catggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24580088 catggccagcctaagggccaagccacccaagcaagggctttagtcctcaaaatttt 24580033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 13241271 - 13241205
Alignment:
Q  346 aaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||| ||| |||||||    
T  13241271 aaaaatttaatttggttatgagtatattatatgatagataaattacagacatttgcatagcttaact 13241205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 12520606 - 12520550
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||| |||||||||    
T  12520606 ggccggcctaagggccaaaccacccaagcaagggttttaggcctcaagattttgggt 12520550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 1214418 - 1214473
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaaattgttgggccggccc 542  Q
    |||||||||||||||||| |||||| |||| || |||||| |||||||||||||||    
T  1214418 tttaaaggccacattaaattttttgctttaggcatcttaatttgttgggccggccc 1214473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 30412836 - 30412884
Alignment:
Q  277 ggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||||||||| ||||||||||||| |||||||||| ||||||| |||||    
T  30412836 ggcctaagggtcaagcaacccaagaaagggctttatgcctcaagatttt 30412884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 25382405 - 25382358
Alignment:
Q  343 tctaaaaaattaatttggttataagtatattatatgacagataaatta 390  Q
    ||||||| |||||||||||||||||||||||| || ||| ||||||||    
T  25382405 tctaaaacattaatttggttataagtatattacataacaaataaatta 25382358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 526
Target Start/End: Complemental strand, 29423390 - 29423351
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaa 526  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  29423390 tttaaaggccgcattaaaatttttgttttaggcctcttaa 29423351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 33384600 - 33384654
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgg 327  Q
    |||||||||||||||||||| ||| ||||  ||| |||||||||||| |||||||    
T  33384600 ggccggcctaagggccaagccaccaaagcgggggttttaggcctcaagattttgg 33384654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 28831498 - 28831543
Alignment:
Q  285 ggccaagcaacccaagcaagggctttaggcctcaaaattttgggtg 330  Q
    |||||||| ||||||||||||  ||||||| |||||||||||||||    
T  28831498 ggccaagcgacccaagcaaggattttaggcatcaaaattttgggtg 28831543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 16872255 - 16872311
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||||| ||||||||||| |||| | |||||  |||||||||||| |||||||||    
T  16872255 ggccggcccaagggccaagccaccctaacaaggattttaggcctcaagattttgggt 16872311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 17856959 - 17857007
Alignment:
Q  494 gccacattaaaatttttgttttatgcctcttaaattgttgggccggccc 542  Q
    ||||||||||| ||||||||||| |||||||||  ||||||| ||||||    
T  17856959 gccacattaaattttttgttttaggcctcttaatctgttgggtcggccc 17857007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 273 - 410
Target Start/End: Complemental strand, 52033030 - 52032894
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    |||||| ||||||||||||||||||||||||||| |||||||| || |||||||| ||         ||||| ||| ||||||||| |||||||||||||    
T  52033030 ggccggtctaagggccaagcaacccaagcaagggttttaggccacacaattttggatgaaaaaaag-gcctcgaaagaattaattttgttataagtatat 52032932  T
Q  373 tatatgacagataaattatagacatttggataacttaa 410  Q
    ||||||||| |||||||||||||||||| ||| |||||    
T  52032931 tatatgacatataaattatagacatttgcatagcttaa 52032894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 29019635 - 29019735
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||||| ||||| |||||||||  ||||||||| |||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||    
T  29019635 ggccggcttaaggaccaagcaacttaagcaagggttttaggcctcaaaattttgggtg-aaaaaagtgcctctaaaaaattaatttggttataaatatat 29019733  T
Q  373 ta 374  Q
    ||    
T  29019734 ta 29019735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 26536389 - 26536456
Alignment:
Q  345 taaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||||||||||||||||||||| | ||||||||| |||||||||| | ||| |||||||    
T  26536389 taaaaaattaatttggttataagtatattatcttacagataaactatagacattcgtatagcttaact 26536456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 26104596 - 26104527
Alignment:
Q  341 cctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaa 410  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||||| |||| |||| ||| |||||    
T  26104596 cctctaaaaaattaatttagttataattatattatatgacaaataaattagagacgtttgcatagcttaa 26104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 53461854 - 53461793
Alignment:
Q  269 gcatggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtg 330  Q
    |||| ||||||||||||||||||||||| |  |||||| |||||||||||||||||||||||    
T  53461854 gcatagccggcctaagggccaagcaacctacacaagggttttaggcctcaaaattttgggtg 53461793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 21795457 - 21795509
Alignment:
Q  277 ggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  21795457 ggcctaagggccaagccatccaagcaagggctttaggcctcaagattttgggt 21795509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 33440764 - 33440712
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  33440764 ggccagcccaagggccaagccacccaagcaagggctttaggcctcaaattttt 33440712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 47042665 - 47042721
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||||||||||||||||| |||||| ||| |||||||||| |||| |||||||||    
T  47042665 ggccggcctaagggccaagccacccaaacaatggctttaggcatcaagattttgggt 47042721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 53461775 - 53461720
Alignment:
Q  345 taaaaaattaatttggttataagtatattatatgacagataaattatagacatttg 400  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||| ||| |||||    
T  53461775 taaaaaataaatttggttataaatatattatatgacaaataaattacagatatttg 53461720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 30611787 - 30611731
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    ||||||||||||||||| |  || ||||||||| |||||| |||||| |||||||||    
T  30611787 ggccggcctaagggccatgtgacacaagcaaggactttagacctcaagattttgggt 30611731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 269 - 412
Target Start/End: Complemental strand, 37606106 - 37605963
Alignment:
Q  269 gcatggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagt 368  Q
    ||||||| ||| ||| ||||||||||||||| ||||||  ||||| ||||||||||||||||         ||||||||||||||||||| |||||||||    
T  37606106 gcatggcaggcataaaggccaagcaacccaaacaagggtcttaggtctcaaaattttgggtgaaaacaaaggcctctaaaaaattaatttagttataagt 37606007  T
Q  369 atattatatgacagataaattatagacatttggataacttaact 412  Q
    || ||||||||||||||||||| |  |||||| ||| |||||||    
T  37606006 atgttatatgacagataaattacaagcatttgcatagcttaact 37605963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 20506600 - 20506669
Alignment:
Q  345 taaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaactta 414  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  20506600 taaaaaattaatttggttataagtatattatgtgacagataaattacagacatttgtataacttaactta 20506669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 279 - 410
Target Start/End: Original strand, 39303362 - 39303491
Alignment:
Q  279 cctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatg 378  Q
    |||||||||||||||||||  | ||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||| ||||||||||     
T  39303362 cctaagggccaagcaaccc--gtaagggctttagacttcaaaattttgggtggcaaaaaaggcctctaaaaaattaatttggttataaatatattatata 39303459  T
Q  379 acagataaattatagacatttggataacttaa 410  Q
    |||||||||||| | ||||||| |||| ||||    
T  39303460 acagataaattacacacatttgcataaattaa 39303491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 21136473 - 21136415
Alignment:
Q  342 ctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttg 400  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21136473 ctctaaaaaattaatttggttataagaatattatatgacagataaattatagacatttg 21136415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 36521091 - 36520964
Alignment:
Q  283 agggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgacag 382  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||        | || |||||||||||||| |||||||| ||||||||||||||     
T  36521091 agggccaagcaacccaagcaagtgctttaagcctcaaaattttggatggaaaaaattccc-ctaaaaaattaattgggttataattatattatatgaca- 36520994  T
Q  383 ataaattatagacatttggataacttaact 412  Q
    |||||||| ||| ||||| |||||||||||    
T  36520993 ataaattacagatatttgcataacttaact 36520964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 273 - 412
Target Start/End: Original strand, 36076296 - 36076436
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntg-cctctaaaaaattaatttggttataagtata 371  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| |||||||||| |||         | |||||||||| ||||||||||||||| ||||    
T  36076296 ggccggtctaagagccaagcaacccaagcaagggttttaggccacaaaattttgagtgaataaaaaaggcctctaaaaatttaatttggttataaatata 36076395  T
Q  372 ttatatgacagataaattatagacatttggataacttaact 412  Q
     | ||||| ||||||| || ||||||||| |||||||||||    
T  36076396 gtgtatgatagataaactacagacatttgcataacttaact 36076436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 400
Target Start/End: Complemental strand, 11033322 - 11033196
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||  |||         | || ||||||||||||||||||||||||||||    
T  11033322 ggccggcttaagggtcaagcaatccaagcaagggttttaggcctcaaaattttatgtgaaaaaaag-gtctttaaaaaattaatttggttataagtatat 11033224  T
Q  373 tatatgacagataaattatagacatttg 400  Q
    ||||||| ||||||| || |||||||||    
T  11033223 tatatgatagataaactacagacatttg 11033196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 13536885 - 13536952
Alignment:
Q  345 taaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  13536885 taaaaaattaatttggtcataagtatattatatgacagataaattacagacatttgaatagcttaact 13536952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 6606258 - 6606310
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6606258 ggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 6606310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 8267385 - 8267455
Alignment:
Q  342 ctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||  ||||||||| ||| |||||||    
T  8267385 ctctaaaaaattaatttgattataagtatattatatgagagataaattccagacatttgcatagcttaact 8267455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 20511689 - 20511812
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatat 372  Q
    ||||| |||||||| ||| |||||||| ||||||||||||| ||||||||||||| |          || |||||||| ||||||||||||||| |||||    
T  20511689 ggccgccctaagggtcaaacaacccaaacaagggctttaggtctcaaaattttggataaaaaaag--gcatctaaaaatttaatttggttataaatatat 20511786  T
Q  373 tatatgacagataaattatagacatt 398  Q
    ||| ||||||| |||||| |||||||    
T  20511787 tatctgacagaaaaattacagacatt 20511812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 13511213 - 13511161
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  13511213 ggccgacctaagggtcaagccacccaagcaagggctttaggcctcaaaatttt 13511161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 4079402 - 4079338
Alignment:
Q  342 ctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataac 406  Q
    |||| |||||||| ||| ||||||| |||||||||||||||| |||||||| ||||||| |||||    
T  4079402 ctcttaaaaattatttttgttataaatatattatatgacagaaaaattataaacatttgtataac 4079338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 20506762 - 20506818
Alignment:
Q  487 tttaaaggccacattaaaatttttgttttatgcctcttaaat-tgttgggccggccc 542  Q
    |||||||| |||||||||||||||| |||||||||||||| | ||||||| ||||||    
T  20506762 tttaaaggtcacattaaaatttttgctttatgcctcttaattctgttgggtcggccc 20506818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 41732442 - 41732334
Alignment:
Q  297 caagcaagggctttaggcctcaaaattttgggtgnnnnnnnntgcctctaaaaaattaatttggttataagtatattatatgacagataaattatagaca 396  Q
    ||||||||||||||||||||||||||| ||||||         ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||    
T  41732442 caagcaagggctttaggcctcaaaattatgggtgaaaaaaaaggcctctaaaaatttaatatggttataagtatattatatgatagataaattacagaca 41732343  T
Q  397 tttggataa 405  Q
    |||| ||||    
T  41732342 tttgcataa 41732334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 43585734 - 43585682
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaatttt 325  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43585734 ggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 43585682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 19527959 - 19528013
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgg 327  Q
    |||||||||||| |||||||||||||| ||| | |||||||||||||||||||||    
T  19527959 ggccggcctaagtgccaagcaacccaatcaatgactttaggcctcaaaattttgg 19528013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 17095682 - 17095626
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttgggt 329  Q
    |||||||||||||| ||||| ||||||||||||| | |||||||||| |||||||||    
T  17095682 ggccggcctaagggtcaagccacccaagcaagggttataggcctcaagattttgggt 17095626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 28440751 - 28440818
Alignment:
Q  342 ctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||||||||||||   ||||||||||||||| |||||||| ||| ||||| ||| |||||||    
T  28440751 ctctaaaaaattaatttggtta---gtatattatatgacaaataaattacagatatttgcataccttaact 28440818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 37941359 - 37941308
Alignment:
Q  361 ttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||||||||| |||||||||  ||||||||| |||||||||||    
T  37941359 ttataagtatattatatgatagataaattgcagacatttgtataacttaact 37941308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 3956187 - 3956134
Alignment:
Q  273 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttg 326  Q
    ||||| || |||||| |||| |||||||||||||||||||||||| | ||||||    
T  3956187 ggccgacccaagggctaagccacccaagcaagggctttaggcctccagattttg 3956134  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 39600947 - 39601000
Alignment:
Q  357 ttggttataagtatattatatgacagataaattatagacatttggataacttaa 410  Q
    |||||||||| ||||  |||||||| | |||||||||||||||| |||||||||    
T  39600947 ttggttataaatataaaatatgacaaacaaattatagacatttgcataacttaa 39601000  T

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Target: scaffold0443 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 7637 - 7566
Alignment:
Q  341 cctctaaaaaattaatttggttataagtatattatatgacagataaattatagacatttggataacttaact 412  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||  ||| |||||||    
T  7637 cctctaaaaaattaatttggttagaagcatattatatgatagataaattatagacattttcatagcttaact 7566  T

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