View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_11 (Length: 410)
Name: NF6981_low_11
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 7948220 - 7947833
Alignment:
| Q |
18 |
ttagttactgtaagaaataaaacttttctccccaaaaaacaggctggttctacggtagaccacttgaaaattatcgtagagataccaatgacaaccgatg |
117 |
Q |
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| T |
7948220 |
ttagttactgtaagaaataaaacttttctccccaaaaaacaggctggttctacggtagaccacttgaaaattatcgtagagataccaatgacaaccgatg |
7948121 |
T |
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| Q |
118 |
ttgctcttggaagtagaaaatcgcagtcatcgttgctgtcataggtgatatggtgacttgattggtgcgtgttctaccaaaacatagaaaaacgaatatg |
217 |
Q |
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| T |
7948120 |
ttgatcttggaagtagaaaatcacagtcatcgttgctgtcataggtgatatggtgacttgattggtgcgtgttctaccaaaacatagaaaaacgaatatg |
7948021 |
T |
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| Q |
218 |
agttgagttttgttgactcattcgttttcccatatgnnnnnnncgaactagtaccaatcaagtcaccatctcactcatgaagacaaagaggattgtg--- |
314 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| || |
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| T |
7948020 |
agttgagttttgttggctcattcgttttcccatatgtttttttcgaactagtatcaatcaagtcaccgtctcactcatgaagacaaagaggatcatgagt |
7947921 |
T |
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| Q |
315 |
ttctgcttccgacaagtactatgagtcatagtttcgggttattttcaagtgttaatccaccttggacacctatctaactggaacacca |
402 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7947920 |
ttctacttccgacaagtaccatgagtcatagtttcgggttattttcaagtgttaatccaccttggacacctatctaactggaccacca |
7947833 |
T |
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