View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_15 (Length: 346)
Name: NF6981_low_15
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 21090481 - 21090586
Alignment:
| Q |
18 |
atttaaaaagtaaattgtcttttttaaatagaatcggagggaatataaatttttctaccgagaataatcatcattaaagatggggacacttcctatgcta |
117 |
Q |
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| T |
21090481 |
atttaaaaagtaaattgtcttttttaaatagaatcggagg-aatataaatttttcaaccgagaacaatcatcattaaagatggggacacttcctatgcta |
21090579 |
T |
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| Q |
118 |
attcaac |
124 |
Q |
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||||||| |
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| T |
21090580 |
attcaac |
21090586 |
T |
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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 21090642 - 21090730
Alignment:
| Q |
180 |
gatccccctacatacatattagctcccacgtccccgttacaatacgtcgccgtatcatcttgaaagaaaagtcccaatcttccaaatca |
268 |
Q |
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| T |
21090642 |
gatccccctacatacatattagctcccacgtccccgttacaatacgtcgccgtatcctcttaaaagaaaagtcccaatcttccaaatca |
21090730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 21092715 - 21092797
Alignment:
| Q |
185 |
ccctacatacatattagctcccacgtccccgttacaatacgtcgccgtatcatcttgaaagaaaagtcccaatcttccaaatc |
267 |
Q |
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| T |
21092715 |
ccctacatacatattagctcacacgtccccgttacaatacgtcgccgtatcctcttaaaagaaaagtcccaatcttccaaatc |
21092797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 2512451 - 2512406
Alignment:
| Q |
21 |
taaaaagtaaattgtcttttttaaatagaatcggagggaatataaa |
66 |
Q |
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| T |
2512451 |
taaaaagtaaattgtctcttgtaaataggatcggagggaatataaa |
2512406 |
T |
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