View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6981_low_17 (Length: 318)

Name: NF6981_low_17
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6981_low_17
NF6981_low_17
[»] chr3 (1 HSPs)
chr3 (9-300)||(48450291-48450582)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 48450582 - 48450291
Alignment:
Q  9 agcagagacaatataaaattaaaatgaaatcaaggcctgctagtttgaaaaaagtgccagaagtgtatacagttataaaagtgtcatgttgttttcatca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48450582 agcagagacaatataaaattaaaatgaaatcaaggcctgctagtttgaaaaaagtgccagaagtgtatacggttataaaagtgtcatgttgttttcatca 48450483  T
Q  109 tgcttcctacaaccatttctcctacacccaatttgtgactaactaacaaaagtggatgcagttaaaactaacttataacaaacttctaatagcacttcta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48450482 tgcttcctacaaccatttctcctacacccaatttgtgactaactaacaaaagtggatgcagttaaaactaacttataacaaacttctaatagcacttcta 48450383  T
Q  209 tgcaataactaaatcaacaattggaaactccacactaaaacaaagacaataaatttaatgagttattaagatgaagaaatggatgattttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48450382 tgcaataactaaatcaacaattggaaactccacactaaaacaaagacaataaatttaatgagttattaagatgaagaaatggatgattttcc 48450291  T

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