View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_18 (Length: 310)
Name: NF6981_low_18
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 41716486 - 41716771
Alignment:
| Q |
16 |
atttgaattgtcttcctcaactccaaaagcagaaactggaaaagttctagaaagtccagaagtagctttgaaagtgattttaccagttggtggatcatca |
115 |
Q |
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| T |
41716486 |
atttgaattgtcttcctcaacttcaaaagcagaaactggaaaagttctagaaagtccagaagtagctttgaaagtgattttaccagttggtggatcatca |
41716585 |
T |
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| Q |
116 |
acataaatatcagctacgttaagccatatcaaaagctctttggctttgacaccattgagtttcttgatcttaccattttcaacataagcagtcacttcag |
215 |
Q |
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| T |
41716586 |
acataaatatcagctacgttaagccatatcaaaagctctttggctttgacaccattgagtttcttgatcttaccattttcaacataagcagtcacttcag |
41716685 |
T |
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| Q |
216 |
tagcataggaaacaagtttcccaatcttttcaaatttgtgtgttatgctattcttctgtttcaaccaaacaaaacctgtttctctg |
301 |
Q |
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| T |
41716686 |
tagcataggaaacaagtttcccaatcttttcaaatttgtgtgttatgctattcttctgtttcaaccaaacaaaacctgtttctctg |
41716771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 26 - 301
Target Start/End: Original strand, 45981911 - 45982186
Alignment:
| Q |
26 |
tcttcctcaactccaaaagcagaaactggaaaagttctagaaagtccagaagtagctttgaaagtgattttaccagttggtggatcatcaacataaatat |
125 |
Q |
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| T |
45981911 |
tcttcttcaatttcaaaagcagaaacagggaaacttctaaaaagtccagaaggtgttttgaaagtgattttaccagttggtggatcatcaatataaatat |
45982010 |
T |
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| Q |
126 |
cagctacgttaagccatatcaaaagctctttggctttgacaccattgagtttcttgatcttaccattttcaacataagcagtcacttcagtagcatagga |
225 |
Q |
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| T |
45982011 |
cacacaaagtaacccaaatcaaaagctctttggttttaacaccattcaatttcttgatcttaccattttcaacataagcagttacttcagttgcatagga |
45982110 |
T |
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| Q |
226 |
aacaagtttcccaatcttttcaaatttgtgtgttatgctattcttctgtttcaaccaaacaaaacctgtttctctg |
301 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
45982111 |
aacaggtttcccaatcttttcaaatttgtgtgttatgcttttcttctgtttcagccaaacaaaacctgtttctctg |
45982186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 37614703 - 37614673
Alignment:
| Q |
84 |
tgaaagtgattttaccagttggtggatcatc |
114 |
Q |
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| T |
37614703 |
tgaaagtgattttaccagttggtggatcatc |
37614673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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