View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_20 (Length: 291)
Name: NF6981_low_20
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 34018061 - 34018229
Alignment:
| Q |
114 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattcatactgataccgaacttcgcccggttgaaa |
213 |
Q |
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| T |
34018061 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattgatactgataccgaacttcgccctgttgaaa |
34018160 |
T |
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| Q |
214 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
282 |
Q |
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| T |
34018161 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
34018229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 34027861 - 34028029
Alignment:
| Q |
114 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattcatactgataccgaacttcgcccggttgaaa |
213 |
Q |
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|||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||| | ||||| |||| |||||||||||||||| || |
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| T |
34027861 |
cctaaactacccctaggcactgtcataactgattctccttcttttctttccgtgatcaattccaccactgatactcatactgaacttcgcccggttgtaa |
34027960 |
T |
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| Q |
214 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
282 |
Q |
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| T |
34027961 |
caagtcaatcagatacagcagcaatcctcttctcatccggaacaacgggacgagtcaaaggagtattat |
34028029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 34016826 - 34016918
Alignment:
| Q |
24 |
gcaaggaaatgtaaatatagaaaatgatatcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
116 |
Q |
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| T |
34016826 |
gcaaggaaatgtaaatatagaaaatgatatcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
34016918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 34023753 - 34023658
Alignment:
| Q |
24 |
gcaaggaaatgtaaatataga--aaatgatatcttcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
116 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34023753 |
gcaaggaaatgtaaatatatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34023658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 34030971 - 34030894
Alignment:
| Q |
40 |
atagaaaatgatatcttcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
116 |
Q |
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|||| ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34030971 |
atagcaaatggtatcttcaaaaatatctgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34030894 |
T |
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