View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_29 (Length: 241)
Name: NF6981_low_29
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_29 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 8322881 - 8322642
Alignment:
| Q |
2 |
ttattctccatgaccttcttctgactattgtaagctgagtagttgccctatcactcgtagtagctagatttgtagttgatctatgaccttgagaaaaaca |
101 |
Q |
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| T |
8322881 |
ttattctccctgaccttcttccgactattgtaagctgagtagttgccccaccactcgtagtagctagatttgtagttgatctatgaccttgagaaaaaca |
8322782 |
T |
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| Q |
102 |
accccttctccaattatcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcatgataagaccacccttgaatatttcccacaaca |
201 |
Q |
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| T |
8322781 |
accccttctccaattatcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccacccttgaatatttcccacaaca |
8322682 |
T |
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| Q |
202 |
tgcttatgcttacattttacacactttgaacgagatttac |
241 |
Q |
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| T |
8322681 |
tgcttatgcttacattttacacactttgaacgagatttac |
8322642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 8262126 - 8262324
Alignment:
| Q |
42 |
agttgccctatcactcgtagtagctagatttgtagttgatctatgaccttgagaaaaacaaccccttctccaattatcaagtatcaaagccttgaaacaa |
141 |
Q |
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| T |
8262126 |
agtttccctatcactcatagaagttgaatttgtaattgacctatctccttgagaaaaataaccccccctccagttctcaagtatcaaagccttgaaacaa |
8262225 |
T |
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| Q |
142 |
gacacatgataactagaatttccatcatgataagaccacccttgaatatttcccacaacatgcttatgcttacattttacacactttgaacgagattta |
240 |
Q |
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| T |
8262226 |
gacacatgataactagaatttccatcataataagaccacccttgaaaatttcccacaacatgcttatgcttacatttcacacactttgaacgagcttta |
8262324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 8280217 - 8280074
Alignment:
| Q |
88 |
ccttgagaaaaacaaccccttctccaattatcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcatgataagaccacccttgaa |
187 |
Q |
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|||| ||||||| ||||| | |||||||| | ||| |||||| |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||| |
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| T |
8280217 |
ccttcagaaaaataacccatcctccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttgaa |
8280118 |
T |
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| Q |
188 |
tatttcccacaacatgcttatgcttacattttacacactttgaa |
231 |
Q |
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| T |
8280117 |
cttttcccataacatgcttatgcttacatttaccacactttgaa |
8280074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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