View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_30 (Length: 236)
Name: NF6981_low_30
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 29739708 - 29739923
Alignment:
| Q |
12 |
aacctgtggttcacaacatcaagaaatcactcacaaaagatgaatcactagatgtgatctagtagaagcattcatcttcaactcatactagaatgaagag |
111 |
Q |
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| T |
29739708 |
aacctctggttcacaacatcaagaaatcactcacaaaagatgaatcactagatgtgatctagtagaagcattcatcttcagctcatactagaatgaagag |
29739807 |
T |
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| Q |
112 |
tcatcagagaaaaatataatgtacgatgattaatcatgaaagtcaagagagcatcttgaatctcacaactttgaacatgacagcttgttaaaacagcgcc |
211 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29739808 |
tcatcagagaataatataatgtgcgatgattaatcatgaaagtcaagagagcatcttgaatctcacaactttggacatgacagcttgttaaaacagcgcc |
29739907 |
T |
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| Q |
212 |
cttactttactcatgg |
227 |
Q |
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|||||| ||||||||| |
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| T |
29739908 |
cttactctactcatgg |
29739923 |
T |
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