View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6981_low_31 (Length: 225)

Name: NF6981_low_31
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6981_low_31
NF6981_low_31
[»] chr7 (2 HSPs)
chr7 (18-214)||(45238753-45238958)
chr7 (83-172)||(45231199-45231288)
[»] chr3 (2 HSPs)
chr3 (89-214)||(37463346-37463471)
chr3 (104-164)||(39428752-39428812)
[»] chr1 (3 HSPs)
chr1 (76-186)||(29424066-29424176)
chr1 (95-172)||(29467031-29467108)
chr1 (112-172)||(29452574-29452634)
[»] chr2 (8 HSPs)
chr2 (89-214)||(9316849-9316974)
chr2 (89-171)||(17565314-17565396)
chr2 (89-214)||(8572702-8572826)
chr2 (89-200)||(9060298-9060409)
chr2 (101-172)||(14551185-14551256)
chr2 (95-172)||(8578731-8578808)
chr2 (107-172)||(9283392-9283457)
chr2 (107-171)||(9275390-9275454)
[»] chr5 (1 HSPs)
chr5 (104-171)||(36225617-36225684)
[»] chr4 (1 HSPs)
chr4 (103-171)||(26575746-26575814)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 45238958 - 45238753
Alignment:
Q  18 cttacctctcccattccaatcaactacaaaatcaatgattctcaatgaacccctcccgccaatgccgaatattccgtcggaattactcaccgaaatcctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45238958 cttacctctcccattccaatcaactacaaaatcaatgattctcaatgaacccctcccgccaatgccgaatattccgtcggaattactcaccgaaatcctc 45238859  T
Q  118 tccat---------gttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatagttacaacttcaccacccttc 208  Q
    |||||         |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45238858 tccatgttatccatgttaccggtagaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatagttacaacttcaccacccttc 45238759  T
Q  209 atctca 214  Q
    ||||||    
T  45238758 atctca 45238753  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 45231288 - 45231199
Alignment:
Q  83 cgaatattccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 172  Q
    |||||||||||||||| |||||||| || || ||||||||| |||| ||| ||||||| |||||||| ||||| || || || |||||||    
T  45231288 cgaatattccgtcggagttactcactgatattctctccatgctacctgtagaatccctcctccgatttcgatctacatcgaaatcacttc 45231199  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 37463471 - 37463346
Alignment:
Q  89 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 188  Q
    ||||| ||||| ||||| ||||||||||||||   ||||||||| |||| || ||||||||||||||||||||||| ||||||   ||||||||||||      
T  37463471 ttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattc 37463372  T
Q  189 ttacaacttcaccacccttcatctca 214  Q
    | ||||||||| || |||||||||||    
T  37463371 tcacaacttcatcaaccttcatctca 37463346  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 39428812 - 39428752
Alignment:
Q  104 tcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaa 164  Q
    |||||||||||||||||   ||||| || |||||||| |||| ||||||||||||||||||    
T  39428812 tcaccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaa 39428752  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 29424176 - 29424066
Alignment:
Q  76 ccaatgccgaatattccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttcttt 175  Q
    |||||| || || ||||| ||||  ||||||||| |||||||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||  |    
T  29424176 ccaatgacggatcttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaat 29424077  T
Q  176 ctttaatcgat 186  Q
    || ||||||||    
T  29424076 ctctaatcgat 29424066  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 29467031 - 29467108
Alignment:
Q  95 cggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 172  Q
    ||||| || |||||| |||| ||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||    
T  29467031 cggaaataatcaccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttc 29467108  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 29452574 - 29452634
Alignment:
Q  112 atcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 172  Q
    ||||||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||    
T  29452574 atcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttc 29452634  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 9316974 - 9316849
Alignment:
Q  89 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 188  Q
    ||||| ||||| ||||| |||||||| |||||   ||||||||| |||| || ||||||||||||||||||||||| ||||||   |||||||| |||      
T  9316974 ttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattc 9316875  T
Q  189 ttacaacttcaccacccttcatctca 214  Q
    | ||||||||| || |||||| ||||    
T  9316874 tcacaacttcatcaaccttcacctca 9316849  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 17565314 - 17565396
Alignment:
Q  89 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 171  Q
    |||| ||||||||| |||| |||||||||||    ||||||||||||||||| |||||| |||||||||| || || ||||||    
T  17565314 ttccatcggaattattcactgaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcactt 17565396  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 8572702 - 8572826
Alignment:
Q  89 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 188  Q
    ||||||||||| || |||| |||||| |||||    |||||||| |||| || ||||||||||||||||||||||| ||||||   ||| ||||||||      
T  8572702 ttccgtcggaaatagtcactgaaatcttctcccgcataccagta-aatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattc 8572800  T
Q  189 ttacaacttcaccacccttcatctca 214  Q
      |||||||||||| |||||| ||||    
T  8572801 ccacaacttcaccaaccttcacctca 8572826  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 9060298 - 9060409
Alignment:
Q  89 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 188  Q
    ||||| ||||| ||||  |||||||| |||||   ||||| || ||||| || ||||||||||||||||||||||| ||||||   || |||||||||      
T  9060298 ttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattc 9060397  T
Q  189 ttacaacttcac 200  Q
    | ||||||||||    
T  9060398 tcacaacttcac 9060409  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 14551256 - 14551185
Alignment:
Q  101 tactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 172  Q
    ||||||||  |||||||||  |||||||   ||||||||| |||| |||||||||||||||||| |||||||    
T  14551256 tactcaccagaatcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttc 14551185  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 8578731 - 8578808
Alignment:
Q  95 cggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 172  Q
    |||||||  ||| ||| |||||||||   ||||| ||||||||||| |||||||||||||||| ||| || |||||||    
T  8578731 cggaattgttcatcgatatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttc 8578808  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 9283392 - 9283457
Alignment:
Q  107 ccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 172  Q
    |||||||| |||||   ||||||||  |||| ||||||||||||||||||||||| || |||||||    
T  9283392 ccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttc 9283457  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 9275454 - 9275390
Alignment:
Q  107 ccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 171  Q
    |||||||| |||||  ||||||||||||||| || ||| ||||||||||||  ||||| ||||||    
T  9275454 ccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcactt 9275390  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 36225684 - 36225617
Alignment:
Q  104 tcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 171  Q
    |||||||||||||||||   |||| ||| |||||||| ||||||||||||||||||||||| ||||||    
T  36225684 tcaccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcactt 36225617  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 26575814 - 26575746
Alignment:
Q  103 ctcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 171  Q
    |||||||||||| |||||   ||||| |||  ||| || ||||||||||||||||||||||| ||||||    
T  26575814 ctcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcactt 26575746  T

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