View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6981_low_32 (Length: 222)
Name: NF6981_low_32
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 41052484 - 41052679
Alignment:
| Q |
16 |
atatcatatcaacttcacaaaggtccatgttcaatgg-tacctctttcaattattactcacaagtcacaagagaacagaactatgaagcacaaacaaaca |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41052484 |
atatcatatcaacttcacaagggtccatgttcaatgggtacctctttcaattattactcacaagtcacaagagaacagaactatgaagcacaaacaaaca |
41052583 |
T |
|
| Q |
115 |
catacacacaac-----ctcaacaatttaagaaaatgaaagtaattaaatgtaaccacatgtatgtgtatggtgcaaaaccattgaagcaataaac |
205 |
Q |
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| T |
41052584 |
catacacacaacacaagctcaacaatttaagaaaatgaaagtaattaaatgtaaccacatgtatgtgtatggtgcaaaaccattgaagcaataaac |
41052679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 25260545 - 25260583
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatgt |
171 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
25260545 |
aatttaagaaaatggaagtaattaaatgtaaccaaatgt |
25260583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 27131720 - 27131682
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatgt |
171 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
27131720 |
aatttaagaaaatggaagtaattgaatgtaaccacatgt |
27131682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 9018917 - 9018880
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatg |
170 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
9018917 |
aatttgagaaaatgaaagtaattgaatgtaaccacatg |
9018880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 56008747 - 56008711
Alignment:
| Q |
130 |
aacaatttaagaaaatgaaagtaattaaatgtaacca |
166 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
56008747 |
aacaatttaagaaaattaaagtaattgaatgtaacca |
56008711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 438726 - 438680
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatgtatgtgtat |
179 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
438726 |
aatttaagaaaattgaagtaattaaatgtaaccacatgtatttgtat |
438680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 16330993 - 16331031
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatgt |
171 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
16330993 |
aatttaagaaaatgaaaatgattaaatgtaaccacatgt |
16331031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 2468520 - 2468482
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatgt |
171 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
2468520 |
aatttaagaaaatggaagtaattgaatgtaaccacatgt |
2468482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 34406442 - 34406482
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacatgtat |
173 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| |||||| |
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|
| T |
34406442 |
aatttaagaaaatgaaagtgattgaatgtaaccatatgtat |
34406482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 29587692 - 29587728
Alignment:
| Q |
133 |
aatttaagaaaatgaaagtaattaaatgtaaccacat |
169 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| |
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|
| T |
29587692 |
aatttaagaaaatggaagtgattaaatgtaaccacat |
29587728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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