View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6981_low_7 (Length: 448)
Name: NF6981_low_7
Description: NF6981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6981_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 42088658 - 42089079
Alignment:
| Q |
17 |
agtagttcacattctactatggctatctctcctatttttgctctttcatcaatattacaatctcaagtactcaaagatctacaagaaacaaatcatacaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42088658 |
agtagttcacattctactatggctatctctcctatttttgctctttcatcaatattacaatctcaagtactcaaagatctacaagaaacaaatcatacaa |
42088757 |
T |
|
| Q |
117 |
gcaagtcatcattcatcaccctctcatcacagcagaaaagttctagcaagaaaatttcacttctctcctttctttaagcatcatcatcctcaaggttttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42088758 |
gcaagtcatcattcatcaccctctcatcacagcagaaaagttctagcaagaaaatttcacttctctcctttctttaagcatcttcatcctcaaggttttg |
42088857 |
T |
|
| Q |
217 |
cagtgcagaaggatccttcagacacagcgatcgacccacgttatggggttgagaagcgccgtgtgcctactggtccaaacccgttacaccattgattgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42088858 |
cagtgcagaaggatccttcagacacagcgatcgatccacgttatggggttgagaagcgccgtgtgcctactggtccaaacccgttacaccattgattgaa |
42088957 |
T |
|
| Q |
317 |
ttctcgatttattttgtctaaaccctctggttctcagggaaatgaggtcctgcttggtaacacgatgctatactaaattaatatattttttgttctgtta |
416 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42088958 |
ttctcgatttattttgtcttaaccctctggttctcaggaaaatgaggtcatgcttggtaacacgatgctatactaaattaatatattttttgttctgtta |
42089057 |
T |
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| Q |
417 |
actttctctttttgatgtccat |
438 |
Q |
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|||||||||||||||| ||||| |
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| T |
42089058 |
actttctctttttgatctccat |
42089079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 42084001 - 42084068
Alignment:
| Q |
17 |
agtagttcacattctactatggctatctctcctatttttgctctttcatcaatattacaatctcaagt |
84 |
Q |
| |
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|||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
42084001 |
agtaattcacattcttctatggctatctttcctatttttgctctttcatgggcattacaatctcaagt |
42084068 |
T |
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