View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_high_1 (Length: 508)
Name: NF6982_high_1
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 508
Target Start/End: Original strand, 24884577 - 24885072
Alignment:
| Q |
13 |
gacatcaatagggtaagatggatgagatttaaataagtgcatcacttacagtatgagcagaaaccacacacaaatttgccatccgaacaactggcttctg |
112 |
Q |
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| T |
24884577 |
gacatcaatagggtaagatggatgagatttaaataagcgcatcacttacagtatgagcagaaaccacacacaaatttgccatccgaacaactggcttctg |
24884676 |
T |
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| Q |
113 |
gggattattgtccaaaatgcgcatgttggaaagttcactctcaaggtccagtcgggttttacttatcattgtagtgaactgcatacattttaagatgtgc |
212 |
Q |
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| T |
24884677 |
gggattattgtccaaaatgcgcatgttggaaagttcactctcaaggtccagtcgggttttacttatcattgtagtgaactgcatacattttaagatgtgc |
24884776 |
T |
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| Q |
213 |
acaatgaacatgtcaagcacacctttcactgagtttgttgaagagaaacaaggtaaacaatcaacttactcttttgtcaatttcttctatgatttccatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884777 |
acaatgaacatgtcaagcacacctttcactgagtttgttgaagagaaacaaggtaaacaatcaacttactcttttgtcaatttcttctatgatttccatg |
24884876 |
T |
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| Q |
313 |
tgacgaggaagcagtttccacattacagattgagaccctttctccagtgcttcggggaggacagtgtggttagtgtaagcaattgtcctggttaagacat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884877 |
tgacgaggaagcagtttccacattacagattgagaccatttctccagtgcttcggggaggacagtgtggttagtgtaagcaattgtcctggttaagacat |
24884976 |
T |
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| Q |
413 |
agcatcatattttagtaataaggaatacagtaatacgctacagaaaagtaaaccagtctagaaatcaagaatatggaaaacaactattccacacaa |
508 |
Q |
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| T |
24884977 |
agcatcatattttagcaataaggaatacagtaatacgctacagaaaagtaaacgagtctagaaataaagaatatggaaaacaacttttccacacaa |
24885072 |
T |
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