View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6982_high_12 (Length: 274)
Name: NF6982_high_12
Description: NF6982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6982_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 25522331 - 25522593
Alignment:
| Q |
1 |
cttacaaatcttcgatttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgaagaattgg |
100 |
Q |
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| T |
25522331 |
cttacaaatcttcgatttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgacgaattgg |
25522430 |
T |
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| Q |
101 |
aactgtcttccgtaaatttgatcaaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaat |
200 |
Q |
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| T |
25522431 |
aactgtcttccgtaaatttgatcaaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaat |
25522530 |
T |
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| Q |
201 |
gcccaattggttatatgnnnnnnnttcattgaagtttttgaacctctctcaaaactatttcat |
263 |
Q |
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| T |
25522531 |
gcccaattggttatatgaaaaaaattcattgaagtttttgaacctctctcaaaactatttcat |
25522593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 42124276 - 42124039
Alignment:
| Q |
19 |
ttatccctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgaagaattggaactgtcttccgtaaatt |
118 |
Q |
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| T |
42124276 |
ttatccctttcatggaatagtcaattatctctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatt |
42124177 |
T |
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| Q |
119 |
tgatcaaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggttatatgn |
218 |
Q |
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| T |
42124176 |
tgatcaaattccataatttacaaggagaattcttagatttgatatcacttgatatttctgataacaaacttcatggaagaatgcccaattggttacttga |
42124077 |
T |
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| Q |
219 |
nnnnnnttcattgaagtttttgaacctctctcaaaact |
256 |
Q |
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| T |
42124076 |
aaaaaattcattgctatttttgaacctctctcaaaact |
42124039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 41571462 - 41571533
Alignment:
| Q |
141 |
aggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggtt |
212 |
Q |
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| T |
41571462 |
aggaaaattccctagtttgagatatcttgatttgtccaacaacaaactttatggaagagtgcccaattggtt |
41571533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 11118917 - 11118722
Alignment:
| Q |
17 |
ttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgaagaattggaactgtcttccgtaaa |
116 |
Q |
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|||||||||||||| |||||| ||| ||||||||||| |||||||||||||||| | ||||| || | |||| || | | || | ||||| || || |
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| T |
11118917 |
ttttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatcttctgtcaa |
11118818 |
T |
|
| Q |
117 |
tttgatcaaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggtt |
212 |
Q |
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| T |
11118817 |
cttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtt |
11118722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 32681369 - 32681419
Alignment:
| Q |
20 |
tatccctttcatggaatactcaattgtcactaaacttcgaatccaatgtca |
70 |
Q |
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| T |
32681369 |
tatctctttcatggaatagtcaattgtcactaaactttgaatccaatgtca |
32681419 |
T |
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